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. Author manuscript; available in PMC: 2009 Jun 1.
Published in final edited form as: Cell Metab. 2008 Jun;7(6):520–532. doi: 10.1016/j.cmet.2008.04.011

Table 1.

List of genes induced ≥2-fold by HFD feeding in wild-type mice and reduced by at least 25% in HFD-fed Alb::GC transgenic mice compared to high fat diet (HFD)-fed wildtype (WT). "Induction" is the ratio of the hybridization signals in LFD-fed versus HFD-fed mice. "% of GC in WT" is defined as the percentage of the signal of HFD-fed Alb::GC in HFD-fed WT mice. The mean ± the average deviation of the expression level (see methods) in WT and Alb::GC from two independent mice is shown. (A) A list of genes encoding transcription factors that satisfy the above criteria but are also induced ≥ 2-fold in AP20187-injected (0.2µg/gm body weight) Ttr::Fv2E-PERK high expressing (line #30) transgenic mice. (B) A list of genes involved in carbohydrate, lipid and amino acid metabolism that satisfy the above criteria.

A
Expression level
HFD induction (fold)
Entrez WT Alb::GC WT Alb::GC % of GC in WT





Name Description Gene LFD HFD LFD HFD HFD/LFD HFD/LFD HFD
Transcription factor
  Pparg peroxisome proliferator activated receptor gamma 19016 0.97 ± 0.28 4.05 ± 0.04 0.68 ± 0.71 0.25 ± 0.11 4.18 ± 1.03 0.37 ± 0.13 6 ± 2
  Crsp6 cofactor required for Sp1 transcriptional activation, subunit 6 234959 0.69 ± 0.13 2.29 ± 0.51 1.02 ± 0.33 0.65 ± 0.22 3.30 ± 0.09 0.63 ± 0.01 28 ± 3
  Jarid1d jumonji, AT rich interactive domain 1D (Rbp2 like) 20592 0.49 ± 0.14 1.38 ± 1.14 1.74 ± 3.07 0.45 ± 0.35 2.84 ± 1.01 0.26 ± 0.12 32 ± 1
  Klf13 Kruppel-like factor 13 50794 0.65 ± 0.27 4.20 ± 0.19 0.87 ± 0.16 1.41 ± 0.63 6.44 ± 1.95 1.61 ± 0.33 33 ± 11
  Ppara peroxisome proliferator activated receptor alpha 19013 0.83 ± 0.13 5.41 ± 0.29 0.61 ± 0.26 1.82 ± 1.35 6.51 ± 0.57 2.99 ± 0.59 34 ± 18
  Sox-4 SRY-box containing gene 4 20677 0.86 ± 0.45 2.93 ± 0.60 0.67 ± 0.02 1.02 ± 0.53 3.41 ± 0.81 1.54 ± 0.61 35 ± 8
  Nfic nuclear factor I/C 18029 0.47 ± 0.05 3.80 ± 0.38 0.59 ± 0.03 1.67 ± 0.35 8.04 ± 0.01 2.81 ± 0.40 44 ± 4
  Cphx cytoplasmic polyadenylated homeobox 105594 0.28 ± 0.37 1.55 ± 0.62 0.13 ± 0.04 0.69 ± 0.22 5.49 ± 2.81 5.24 ± 0.12 44 ± 3
  Akna AT-hook transcription factor 100182 0.39 ± 0.24 1.69 ± 0.48 0.60 ± 0.14 0.79 ± 0.25 4.33 ± 1.79 1.31 ± 0.35 47 ± 6
  Mxd3 Max dimerization protein 3 17121 0.29 ± 0.06 1.10 ± 0.09 0.54 ± 0.23 0.56 ± 0.52 3.84 ± 0.44 1.04 ± 0.32 51 ± 31
  Mef2a myocyte enhancer factor 2A 17258 0.27 ± 0.02 1.73 ± 0.19 0.51 ± 0.81 0.96 ± 0.32 6.39 ± 0.29 1.88 ± 1.33 55 ± 10
  Klf3 Kruppel-like factor 3 (basic) 16599 0.74 ± 0.04 1.74 ± 0.08 0.93 ± 0.04 1.04 ± 0.17 2.37 ± 0.01 1.12 ± 0.12 60 ± 6
  Nfkb2 NF-kappaB2/p100 18034 0.27 ± 0.03 3.27 ± 0.10 0.32 ± 0.00 1.98 ± 0.36 11.93 ± 0.81 6.27 ± 0.97 61 ± 8
  Bach2 BTB and CNC homology 2 12014 0.52 ± 0.62 1.90 ± 0.18 0.50 ± 0.11 1.16 ± 0.39 3.66 ± 2.73 2.29 ± 0.23 61 ± 12
  Zkscan1 zinc finger with KRAB and SCAN domains 1 74570 0.73 ± 0.14 1.60 ± 0.05 0.98 ± 0.04 1.11 ± 0.14 2.20 ± 0.33 1.13 ± 0.09 69 ± 6
B
Expression level
HFD induction (fold)
Entrez WT Alb::GC WT Alb::GC % of GC in WT





Name Description Gene LFD HFD LFD HFD HFD/LFD HFD/LFD HFD
Carbonhydrate metabolism
  Pdha2 pyruvate dehydrogenase E1 alpha 2 18598 0.16 ± 0.02 0.37 ± 0.26 0.23 ± 0.14 0.14 ± 0.06 2.26 ± 1.01 0.61 ± 0.07 39 ± 7
  Pdk3 pyruvate dehydrogenase kinase, isoenzyme 3 236900 0.33 ± 0.02 0.87 ± 0.09 0.38 ± 0.05 0.37 ± 0.06 2.61 ± 0.14 0.98 ± 0.03 42 ± 3
  Mdh2 malate dehydrogenase 2, NAD (mitochondrial) 17448 0.75 ± 0.18 1.91 ± 0.10 0.64 ± 0.04 1.11 ± 0.04 2.54 ± 0.42 1.72 ± 0.04 58 ± 1
  Agl amylo-1,6-glucosidase, 4-alpha-glucanotransferase 77559 0.85 ± 0.13 1.85 ± 0.07 0.71 ± 0.04 1.09 ± 0.09 2.17 ± 0.23 1.54 ± 0.03 59 ± 2
  Ppp2r5e protein phosphatase 2, regulatory subunit B (B56), epsilon 26932 0.43 ± 0.03 2.57 ± 0.19 0.45 ± 0.35 1.52 ± 0.40 6.00 ± 0.02 3.37 ± 1.17 59 ± 10
  Ppp1r1a protein phosphatase 1, regulatory (inhibitor) subunit 1A 58200 0.60 ± 0.11 1.39 ± 0.04 0.79 ± 0.10 0.84 ± 0.20 2.33 ± 0.32 1.07 ± 0.09 61 ± 11
  Gyg glycogenin 27357 0.68 ± 0.09 1.99 ± 0.12 0.31 ± 0.61 1.26 ± 0.20 2.93 ± 0.18 4.11 ± 4.48 63 ± 6
  Pcx pyruvate carboxylase 18563 0.72 ± 0.07 1.90 ± 0.08 0.72 ± 0.11 1.19 ± 0.08 2.64 ± 0.17 1.66 ± 0.20 63 ± 2
  Pklr pyruvate kinase liver and red blood cell 18770 0.66 ± 0.09 1.67 ± 0.10 0.99 ± 0.15 1.11 ± 0.06 2.53 ± 0.25 1.12 ± 0.07 66 ± 3
  Gbe1 glucan (1,4-alpha-), branching enzyme 1 74185 0.60 ± 0.01 2.07 ± 0.17 0.71 ± 0.01 1.40 ± 0.14 3.43 ± 0.22 1.96 ± 0.15 68 ± 1
  Suclg2 succinate-Coenzyme A ligase, GDP-forming, beta subunit 20917 0.73 ± 0.02 1.59 ± 0.03 0.84 ± 0.06 1.13 ± 0.04 2.17 ± 0.02 1.34 ± 0.05 71 ± 1
Lipid metabolism
  Scd1 stearoyl-Coenzyme A desaturase 1 20249 0.81 ± 0.19 3.43 ± 0.11 1.18 ± 0.25 0.90 ± 0.10 4.24 ± 0.77 0.76 ± 0.06 26 ± 2
  Fasn fatty acid synthase 14104 0.85 ± 0.25 2.26 ± 0.09 0.98 ± 0.08 0.88 ± 0.06 2.66 ± 0.58 0.90 ± 0.01 39 ± 1
  Gpd2 glycerol phosphate dehydrogenase 2, mitochondrial 14571 0.86 ± 0.29 1.86 ± 0.05 0.89 ± 0.03 0.84 ± 0.24 2.17 ± 0.58 0.95 ± 0.21 45 ± 10
  Lpl lipoprotein lipase 16956 0.66 ± 0.15 1.96 ± 0.68 0.83 ± 0.36 0.93 ± 0.48 2.95 ± 0.27 1.13 ± 0.06 48 ± 6
  Olah oleoyl-ACP hydrolase 99035 0.12 ± 0.00 0.34 ± 0.07 0.12 ± 0.01 0.17 ± 0.05 2.82 ± 0.47 1.43 ± 0.27 50 ± 4
  Acaca acetyl-Coenzyme A carboxylase alpha 107476 0.62 ± 0.43 1.82 ± 0.30 0.71 ± 0.02 1.11 ± 0.19 2.94 ± 1.12 1.58 ± 0.20 61 ± 0
  Gyk glycerol kinase 14933 0.53 ± 0.04 1.84 ± 0.06 0.69 ± 0.16 1.16 ± 0.00 3.46 ± 0.16 1.68 ± 0.35 63 ± 2
  Hadh hydroxyacyl-Coenzyme A dehydrogenase 15107 0.32 ± 0.16 2.78 ± 0.02 0.25 ± 0.02 1.87 ± 0.44 8.57 ± 3.53 7.45 ± 0.94 67 ± 14
Translation, amino acid import and metabolism
  Eif3s6 eukaryotic translation initiation factor 3, subunit 6 16341 0.42 ± 0.11 1.03 ± 0.18 0.81 ± 0.92 0.33 ± 0.11 2.43 ± 0.14 0.41 ± 0.21 32 ± 4
  Aoc3 amine oxidase, copper containing 3 11754 0.21 ± 0.04 0.67 ± 1.23 0.55 ± 1.35 0.19 ± 0.05 3.17 ± 3.17 0.35 ± 0.42 29 ± 26
  Pgd phosphogluconate dehydrogenase 110208 0.91 ± 0.18 2.04 ± 0.05 1.00 ± 0.11 0.82 ± 0.02 2.24 ± 0.35 0.82 ± 0.06 40 ± 0
  Rps18 ribosomal protein S18 20084 0.61 ± 0.11 2.39 ± 2.01 1.03 ± 0.09 0.96 ± 0.08 3.91 ± 1.77 0.93 ± 0.01 40 ± 22
  RPL39L ribosomal protein L39-like 68172 0.50 ± 0.20 1.32 ± 0.71 0.12 ± 0.03 0.75 ± 0.03 2.65 ± 0.26 6.33 ± 1.31 57 ± 23
  Slc12a1 solute carrier family 12, member 1 20495 0.16 ± 0.10 1.80 ± 0.07 0.57 ± 0.84 1.25 ± 1.38 11.52 ± 5.41 2.22 ± 0.37 70 ± 53
  Tph1 tryptophan hydroxylase 1 21990 0.44 ± 0.14 1.40 ± 0.34 1.25 ± 0.55 0.99 ± 0.43 3.22 ± 0.23 0.79 ± 0.00 71 ± 10