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. Author manuscript; available in PMC: 2008 Jul 21.
Published in final edited form as: J Mol Biol. 2007 Mar 30;369(3):812–828. doi: 10.1016/j.jmb.2007.03.065

Scheme 1.

Scheme 1

Two-step model of SL1 dimerization and isomerization. KL stands for kissing loop and ED for extended duplex. The sequence shown here corresponds to the subtype B (Lai variant) of HIV-1, but the nucleotides are numbered according to the subtype A sequence (Mal variant) for the sake of consistency. Stem- and flanking-bulges are highlighted in gray.