Table 2.
The top 22 features in the BART model for the Oct4 ChIP-chip data
| Feature | Pin | PSI | t | Notes/Consensus |
|---|---|---|---|---|
| SoxOcta | 1.000 | 3.50 | 14.0 | CWTTNWTATGYAAAT |
| GC | 1.000 | 1.56 | 2.7 | Background |
| CAA | 0.998 | 2.18 | 4.4 | Background |
| CCA | 0.987 | 1.45 | −5.2 | Background |
| Length | 0.964 | 1.37 | 7.8 | Sequence length |
| HSF1_Q6 | 0.963 | 1.32 | 1.2 | TTCTRGAAVNTTCTYM |
| AA | 0.945 | 1.41 | 2.7 | Background |
| G/C | 0.870 | 1.46 | 0.9 | GC content |
| UF1H3b_Q6a | 0.821 | 1.14 | 7.8 | GCCCCWCCCCRCC |
| CA | 0.760 | 1.19 | −6.1 | Background |
| CGC | 0.723 | 1.04 | 4.6 | Background |
| AAT | 0.693 | 0.96 | 0.7 | Background |
| cs | 0.691 | 0.91 | 8.0 | Conservation |
| OCT_Q6a | 0.649 | 0.95 | 10.2 | TNATTTGCATN |
| NFY_Q6a | 0.628 | 0.84 | 2.8 | TRRCCAATSRN |
| CGA | 0.622 | 0.87 | 7.7 | Background |
| OCT1_Q6a | 0.589 | 0.79 | 8.8 | ATGCAAATNA |
| OCT1_Q5_01a | 0.575 | 0.78 | 10.2 | TNATTTGCATW |
| GA | 0.564 | 0.78 | −0.5 | Background |
| E2F_Q3_01 | 0.540 | 0.75 | 8.6 | TTTSGCGSG |
| GCA | 0.528 | 0.70 | 2.5 | Background |
| E2F1_Q4_01 | 0.512 | 0.68 | 8.8 | TTTSGCGSG |
The ‘t’ is the t-statistics between the positive and negative ChIP regions. aMotifs with reported functions in ESCs.