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. 2008 May 31;36(12):3978–3992. doi: 10.1093/nar/gkn332

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© 2008 The Author(s)

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 9. — Examples of DNA-binding protein prediction on APO104. (A–D) In each panel, the left snapshot shows the structural alignment of the apo-structure and its corresponding holo-structure, and the right snapshot shows the alignment of the target apo-structure versus its template. The apo-, holo- and template structures are colored in red, blue and green, respectively. In (B), all proteins are composed of two monomers. The monomer studied is shown in solid color, while the other monomer is dimmed. PDB codes are given in parentheses.