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. 2008 May 31;36(12):3978–3992. doi: 10.1093/nar/gkn332

Table 3.

A list of structural genomics targets predicted as DNA-binding proteins from SG1697

Target Template TM-score RMSD SID Energy Putative function
1j27A 2bdpA 0.63 2.40 0.035 −5.4 UK
1nogA 1sknP 0.58 3.28 0.043 −15.9 NB
1s7oA 1gdtA 0.67 1.46 0.116 −7.1 DB
1sfxA 1h0mD 0.59 2.76 0.155 −22.7 DB
1t6sA 1u8rJ 0.65 2.25 0.14 −7.3 NB
1tuaA 1jj4A 0.55 2.37 0.123 −14.8 UK
1vbkA 1jj4A 0.63 2.21 0.188 −5.0 NB
1wi9A 1qbjB 0.68 2.31 0.133 −12.2 UK
1wj5A 1qbjB 0.70 2.16 0.177 −16.0 UK
1x58A 1w0tA 0.87 1.22 0.275 3.8 DB
1xg7A 2bzfA 0.59 3.46 0.096 −13.4 UK
1z7uA 1h0mD 0.61 2.51 0.138 −15.6 DB
1zelA 1qbjB 0.61 2.65 0.183 −12.1 UK
2da4A 1pufA 0.64 1.72 0.211 −29.1 UK
2dceA 1qbjB 0.59 2.14 0.179 −10.2 UK
2e1oA 1jkqC 0.55 2.91 0.143 −21.4 UK
2eshA 1cgpA 0.62 1.56 0.137 −19.4 UK
2esnA 1u8rJ 0.62 2.21 0.121 −12.2 DB
2ethA 1u8rJ 0.71 1.84 0.186 −17.3 DB
2f2eA 1sfuA 0.65 1.89 0.143 −11.7 DB
2fiuA 1jj4A 0.66 2.50 0.057 −4.9 UK
2fmlA 1qbjB 0.57 2.44 0.075 −12.7 UK
2fnaA 1qbjB 0.66 1.83 0.204 −5.0 UK
2fyxA 2a6oB 0.79 1.67 0.289 −20.9 DB
2hytA 1jt0A 0.75 1.61 0.212 −14.1 DB
2g7uA 1cgpA 0.69 1.72 0.20 −15.2 DB
2iaiA 1jt0A 0.64 3.36 0.25 −5.4 DB
2jn6A 1gdtA 0.70 2.16 0.14 −10.7 UK
2nr3A 1sfuA 0.70 2.34 0.103 −10.3 UK
2nx4A 1jt0A 0.76 2.07 0.143 −2.6 DB
2od5A 1gdtA 0.58 2.36 0.122 −9.7 DB
2p8tA 1h0mD 0.57 2.27 0.123 −16.8 UK
2pg4A 1z9cF 0.72 2.05 0.181 −8.5 UK
2qc0A 1sfuA 0.65 2.18 0.111 −9.6 UK
2qvoA 1sfuA 0.72 1.94 0.043 −10.5 UK
3b73A 1cgpA 0.65 1.54 0.204 −23.7 UK
3bddA 1cgpA 0.65 1.48 0.259 −17.4 DB

RMSD and sequence identity were calculated for the structurally aligned region between the target and the template with TM-align. Targets are labeled according to their putative function annotated in their PDB records: DB (DNA-binding), NB (function not related to DNA-binding) and UK (unknown).