Table 3.
A list of structural genomics targets predicted as DNA-binding proteins from SG1697
Target | Template | TM-score | RMSD | SID | Energy | Putative function |
---|---|---|---|---|---|---|
1j27A | 2bdpA | 0.63 | 2.40 | 0.035 | −5.4 | UK |
1nogA | 1sknP | 0.58 | 3.28 | 0.043 | −15.9 | NB |
1s7oA | 1gdtA | 0.67 | 1.46 | 0.116 | −7.1 | DB |
1sfxA | 1h0mD | 0.59 | 2.76 | 0.155 | −22.7 | DB |
1t6sA | 1u8rJ | 0.65 | 2.25 | 0.14 | −7.3 | NB |
1tuaA | 1jj4A | 0.55 | 2.37 | 0.123 | −14.8 | UK |
1vbkA | 1jj4A | 0.63 | 2.21 | 0.188 | −5.0 | NB |
1wi9A | 1qbjB | 0.68 | 2.31 | 0.133 | −12.2 | UK |
1wj5A | 1qbjB | 0.70 | 2.16 | 0.177 | −16.0 | UK |
1x58A | 1w0tA | 0.87 | 1.22 | 0.275 | 3.8 | DB |
1xg7A | 2bzfA | 0.59 | 3.46 | 0.096 | −13.4 | UK |
1z7uA | 1h0mD | 0.61 | 2.51 | 0.138 | −15.6 | DB |
1zelA | 1qbjB | 0.61 | 2.65 | 0.183 | −12.1 | UK |
2da4A | 1pufA | 0.64 | 1.72 | 0.211 | −29.1 | UK |
2dceA | 1qbjB | 0.59 | 2.14 | 0.179 | −10.2 | UK |
2e1oA | 1jkqC | 0.55 | 2.91 | 0.143 | −21.4 | UK |
2eshA | 1cgpA | 0.62 | 1.56 | 0.137 | −19.4 | UK |
2esnA | 1u8rJ | 0.62 | 2.21 | 0.121 | −12.2 | DB |
2ethA | 1u8rJ | 0.71 | 1.84 | 0.186 | −17.3 | DB |
2f2eA | 1sfuA | 0.65 | 1.89 | 0.143 | −11.7 | DB |
2fiuA | 1jj4A | 0.66 | 2.50 | 0.057 | −4.9 | UK |
2fmlA | 1qbjB | 0.57 | 2.44 | 0.075 | −12.7 | UK |
2fnaA | 1qbjB | 0.66 | 1.83 | 0.204 | −5.0 | UK |
2fyxA | 2a6oB | 0.79 | 1.67 | 0.289 | −20.9 | DB |
2hytA | 1jt0A | 0.75 | 1.61 | 0.212 | −14.1 | DB |
2g7uA | 1cgpA | 0.69 | 1.72 | 0.20 | −15.2 | DB |
2iaiA | 1jt0A | 0.64 | 3.36 | 0.25 | −5.4 | DB |
2jn6A | 1gdtA | 0.70 | 2.16 | 0.14 | −10.7 | UK |
2nr3A | 1sfuA | 0.70 | 2.34 | 0.103 | −10.3 | UK |
2nx4A | 1jt0A | 0.76 | 2.07 | 0.143 | −2.6 | DB |
2od5A | 1gdtA | 0.58 | 2.36 | 0.122 | −9.7 | DB |
2p8tA | 1h0mD | 0.57 | 2.27 | 0.123 | −16.8 | UK |
2pg4A | 1z9cF | 0.72 | 2.05 | 0.181 | −8.5 | UK |
2qc0A | 1sfuA | 0.65 | 2.18 | 0.111 | −9.6 | UK |
2qvoA | 1sfuA | 0.72 | 1.94 | 0.043 | −10.5 | UK |
3b73A | 1cgpA | 0.65 | 1.54 | 0.204 | −23.7 | UK |
3bddA | 1cgpA | 0.65 | 1.48 | 0.259 | −17.4 | DB |
RMSD and sequence identity were calculated for the structurally aligned region between the target and the template with TM-align. Targets are labeled according to their putative function annotated in their PDB records: DB (DNA-binding), NB (function not related to DNA-binding) and UK (unknown).