Table 2. Mutants with mutations A11G, C35U, and C36U in the full alignment of the 47 nt Hepatitis C virus cis-acting replication (HCV CRE) element.
| A11G | |
| AF054264.1/326-376 | (A1G),(A11G) |
| C35U | |
| D14853.1/9264-9314 | (A15U),(C25G),(G32A),(C35U),(A39G) |
| D16190.1/986-1036 | (A15U),(C25G),(G32A),(C35U),(A39G),(C45U) |
| D16192.1/986-1036 | (G2A),(A15U),(C25G),(C35U),(A39G),(C45U) |
| C36U | |
| D87352.1/983-1033 | (A1G),(A9G),(A13G),(C25G),(U26C),(U30C),(U33G),(C36U) |
| D37862.1/983-1033 | (A9G),(A13G),(A15U),(C25G),(U26C),(U30C),(U33G),(C36U),(U46A) |
| D49769.1/983-1033 | (A1G),(A9C),(C25G),(U30G),(U33A),(C36U) |
| D37859.1/983-1033 | (A9G),(A17U),(C25G),(U30C),(G32A),(U33G),(C36U),(A39G),(U46A) |
| D31973.1/986-1036 | (A1G),(A9C),(C25G),(U30G),(U33A),(C36U),(U46C) |
| D87358.1/983-1033 | (A9G),(A15U),(C25G),(U30C),(U33G),(C36U),(U46A) |
| D87356.1/983-1033 | (A1G),(G2A),(A9G),(A15U),(C25G),(U30C),(U33G),(C36U),(C45U),(U46C) |
| D84263.2/9267-9317 | (A9G),(A17U),(C25G),(U30C),(U33G),(C36U),(A39G),(U46A) |
| AY973865.1/1663-1713 | (A1G),(G2A),(A9G),(A15U),(C25G),(U30C),(G32A),(U33G),(C36U),(C45U),(U46C) |
| D86543.1/983-1033 | (A1G),(A9G),(A15U),(A20G),(C25A),(U30C),(U33C),(C36U) |
| D87360.1/983-1033 | (A1G),(G2A),(A9G),(A15U),(C25G),(U30C),(G32A),(U33G),(C36U),(C45U),(U46C) |
| AY878650.1/9259-9309 | (A9G),(A15U),(C25G),(U30C),(U33G),(C36U),(U46A) |
| D87354.1/983-1033 | (A9G),(A17U),(C25G),(U30C),(U33G),(C36U),(A39G),(U46A) |
| D49777.1/983-1033 | (A1G),(A9C),(C25G),(U30G),(U33A),(C36U) |
| D84264.2/9276-9326 | (A9G),(A15U),(C25G),(U30C),(U33G),(C36U),(U46A) |
| D87357.1/983-1033 | (A9G),(A15U),(C25G),(U30C),(U33G),(C36U),(U46A) |
| D38079.1/983-1033 | (A9G),(A17U),(C25G),(U30C),(G32A),(U33G),(C36U),(A39G),(U46A) |
| D84398.1/983-1033 | (A1G),(A9C),(C25G),(U30G),(U33A),(C36U),(U46C) |
| AY859526.1/9242-9292 | (A1G),(G2A),(A9G),(A15U),(C25G),(U30C),(G32A),(U33G),(C36U),(C45U),(U46C) |
| D87355.1/983-1033 | (A9G),(A15U),(C25G),(U30C),(U33G),(C36U),(U46A) |
| AY973866.1/1663-1713 | (A1G),(G2A),(A9G),(A15U),(C25G),(U30C),(G32A),(U33G),(C36U),(C45U),(U46C) |
| D37855.1/983-1033 | (A1G),(G2A),(A9G),(A15U),(C25G),(U30C),(U33G),(C36U),(C45U),(U46C) |
| D84262.2/9289-9339 | (A1G),(G2A),(A9G),(A15U),(C25G),(U30C),(U33G),(C36U),(C45U),(U46C) |
| D84265.2/9273-9323 | (A1G),(A9G),(A13G),(C25G),(U26C),(U30C),(U33G),(C36U) |
| D50409.1/9341-9391 | (A1G),(A9C),(C25G),(U30G),(U33A),(C36U),(A39G),(U46C) |
| D87353.1/983-1033 | (A1G),(A9G),(A13G),(C25G),(U26C),(U30C),(U33G),(C36U) |
| D87359.1/983-1033 | (A9G),(A15U),(C25G),(U30C),(U33G),(C36U),(U46A) |
| D87363.1/983-1033 | (A1G),(G2A),(A9G),(A15U),(C25G),(U30C),(G32A),(U33G),(C36U),(C45U),(U46C) |
| D37860.1/983-1033 | (A9G),(A17U),(C25G),(U30C),(G32A),(U33G),(C36U),(A39G),(U46A) |
| D87362.1/983-1033 | (A1G),(G2A),(A9G),(A15U),(C25G),(U30C),(G32A),(U33G),(C36U),(C45U),(U46C) |
See text for a comparison of this table produced by RNAmutants with the experimental mutagenesis study of You et al. [39].