TABLE 1.

Empirically determined P-values for the highest LOD score recorded in each linkage group

LGa	LODb	P-valuec	5% thresholde
1	2.7	0.024d	2.0
2	0.9	0.57	2.1
3	1.6	0.13	2.0
4	0.5	0.9	1.5
5	1.2	0.25	2.0
6	2.0	0.057	2.0
7	2.6	0.017d	2.1
8	1.1	0.33	2.0
9	1.7	0.11	2.0
10	0.5	0.84	1.9
11	1.2	0.25	1.9
12	0.9	0.38	2.0
13	2.3	0.035d	2.0
14	1.1	0.3	2.1
15	2.9	0.0049d	2.4
16	0.5	0.46	2.0

^aLinkage group (LG) number refers to the NCBI assigned chromosome number in AmelMap_4 (Solignac et al. 2007).

^bRefers to the highest LOD score calculated in the linkage group using interval mapping.

^cCalculated empirically through 10,000 permutations (Churchill and Doerge 1994).

^dSignificant with a false discovery rate of 5%.

^eLOD threshold for 5% significance level across the linkage group, calculated by permutation (10,000 iterations).