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. 2008 Apr 4;95(3):1050–1062. doi: 10.1529/biophysj.107.123125

TABLE 2.

Symbols and input parameters

Parameter Symbol Value References
Barbed-end G-ATP on-rate. Inline graphic 11.6 μM−1 s−1 (29)
Barbed-end G-ADP+Pi on-rate. Inline graphic 0 See note below.
Barbed-end G-ADP on-rate. Inline graphic 2.9 μM−1 s−1 (29)
Pointed-end G-ATP on-rate. Inline graphic 1.3 μM−1 s−1 (29)
Pointed-end G-ADP+Pi on-rate. Inline graphic 0 See note below.
Pointed-end G-ADP on-rate. Inline graphic 0.13 μM−1 s−1 Calculated. See note below.
Barbed-end F-ATP off-rate. Inline graphic 1.4 s−1 (29)
Barbed-end F-ADP+Pi off-rate. Inline graphic 1.4 s−1 Equivalence with F-ATP.
Barbed-end F-ADP off-rate. Inline graphic 5.4 s−1 (29)
Pointed-end F-ATP off-rate. Inline graphic 0.8 s−1 (29)
Pointed-end F-ADP+Pi off-rate. Inline graphic 0.8 s−1 Equivalence with F-ATP.
Pointed-end F-ADP off-rate. Inline graphic 0.25 s−1 (29)
Pointed-end Arp2/3 uncapping rate. kun 0 (24)
Filament branching rate per subunit. Inline graphic 0.01 μ−3 s−1 Simulations fit to data.
F-ATP debranching rate. Inline graphic 0.02 s−1 (46)
F-ADP+Pi debranching rate. Inline graphic 0.04 s−1 (46)
F-ADP debranching rate. Inline graphic 0.2 s−1 (46)
Severing rate per subunit. ksev 5.0 × 10−4 Simulations fit to data.
Filament annealing rate. Inline graphic 300 μM−1 s−1 (50)
G-ATP hydrolysis rate. Inline graphic 0 (41)
G-ADP+Pi inorganic phosphate release rate. Inline graphic (41)
F-ATP hydrolysis rate. Inline graphic 0.3 s−1 (51)
F-ADP+Pi inorganic phosphate release rate. Inline graphic 0.002 s−1 (12)
F-ATP hydrolysis range. khyd 0.02–0.78 s−1 Varied in 0.04 s−1 steps.
F-ADP+Pi inorganic phosphate release range. kphos 0.002–0.078 s−1 Varied in 0.004 s−1 steps.
Nucleotide exchange rate. kex 0.01 s−1 (45)

Table of all input parameters used in the stochastic simulation. In accordance with the arguments of Bindschadler et al. (41), we assume that inorganic phosphate is instantly released into solution upon depolymerization of an F-ADP+Pi subunit. The F-ADP pointed-end on-rate is calculated such that the critical concentration at the pointed-end is equal to that of the barbed-end.