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. Author manuscript; available in PMC: 2009 Jun 13.
Published in final edited form as: J Chromatogr A. 2008 Mar 27;1194(1):3–10. doi: 10.1016/j.chroma.2008.03.065

Table 1.

Proteins identified from both cell lines, TOV112D, and MDAH2774.

Access No. Protein Name Expression change(fold)Theritical Experimental pI
TOV112D MDAH2774 pI TOV 112D MDAH 2774

P31947 14-3-3 protein sigma 98.4 4.68 pH4.6-4.4 pH4.4-4.2
P62736 Actin, aortic smooth muscle 6.3 5.24 pH5.6-5.4 pH5.2-5.0
P60709 Actin, cytoplasmic 1 3.6 5.29 pH5.6-5.4 pH5.2-5.0
P63261 Actin, cytoplasmic 2 (Gamma-actin) 5.31 abovepH7.5 abovepH7.5
P12814 Alpha-actinin-1 (Alpha-actinin cytoskeletal isoform) 1.1 5.25 pH5.2-5.0 pH4.2-4.0
O43707 Alpha-actinin-4 (Non-muscle alpha-actinin 4) 5.27 abovepH7.5 above pH 7.5
Q9H2P0 Activity-dependent neuroprotector 3.1 6.97 pH6.2-6.0 pH6.8-6.6
P51825 AF4/FMR2 family member 1,Proto-oncogene AF4 2.7 9.26 abovepH7.5 abovepH7.5
Q16352 Alpha-internexin 5.34 abovepH7.5 salt washing
P02768 Serum albumin [Precursor] 8.9 5.67 pH5.6-5.4 pH5.6-5.4
Q01484 Ankyrin-2 5.03 pH5.0-4.8 pH5.2-5.0
Q86YR6 Ankyrin repeat domain-containing protein 21 2.6 6.32 pH6.6-6.4 pH7.0-6.8
P50995 Annexin A11 (Annexin XI) 7.53 salt washing salt washing
P07355 Annexin A2 7.2 7.56 pH5.8-5.6 pH6.0-5.8
P12429 Annexin A3 8.8 5.63 pH5.6-5.4 pH5.6-5.4
Q9NR81 Rho guanine nucleotide exchange factor 3 4.4 6.03 pH4.8-4.6 pH4.4-4.2
Q68CP9 AT-rich interactive domain-containing protein 2 3.2 7.08 pH7.2-7.0 pH7.2-7.0
P06576 ATP synthase subunit beta, mitochondrial precursor 15.5 5 pH5.6-5.4 pH5.6-5.4
O75173 ADAMTS-4 [Precursor] 3.2 8.23 pH4.6-4.4 abovepH7.5
Q8WWM7 Ataxin-2-like protein 2.7 8.7 above pH7.5 abovepH7.5
Q8IY92 BTB/POZ domain-containing protein 12 1.5 5.32 pH6.2-6.0 abovepH7.5
Q05682 Caldesmon (CDM) 1.8 5.63 abovepH7.5 abovepH7.5
P62158 Calmodulin (CaM) 6.7 4.09 pH4.4-4.2 pH4.4-4.2
P83916 Chromobox protein homolog 1 4.85 above pH7.5 abovepH7.5
P47902 Homeobox protein CDX-1 3.3 9.58 pH6.2-6.0 pH6.0-5.8
P49454 Centromere protein F 1.7 5.03 pH4.8-4.6 pH4.6-4.4
Q86VQ0 Uncharacterized protein C6orf152 1.7 7.31 pH6.6-6.4 pH6.6-6.4
Q9HAC7 Uncharacterized protein C7orf10 2.6 8.54 salt washing salt washing
Q9P2M7 Cingulin 2.2 5.46 pH7.2-7.0 pH7.2-7.0
P53618 Coatomer subunit beta 4.3 5.72 pH4.8-4.6 pH4.6-4.4
Q92828 WD repeat-containing protein 2 2 8.24 pH5.6-5.4 pH6.0-5.8
Q8IVV8 Protein FAM77A 3.2 5.43 above pH7.5 abovepH7.5
Q14118 Dystrophin-associated glycoprotein 1 2.4 9.31 above pH7.5 above pH7.5
Q9UIK4 Death-associated protein kinase 2 28.5 6.45 pH6.8-6.6 abovepH7.5
P16989 DNA-binding protein A 27 9.77 above pH7.5 pH7.2-7.0
Q13561 Dynactin subunit 2 (Dynactin complex 50 kDa subunit) 11.9 5.1 pH5.2-5.0 pH4.6-4.4
P17661 Desmin 2.6 5.21 pH5.4-5.2 pH5.4-5.2
O00273 DNA fragmentation factor subunit alpha 1.4 4.68 pH4.8-4.6 PH4.8-4.6
O60469 Down syndrome cell adhesion molecule [Precursor] 1.7 7.81 pH5.2-5.0 pH5.2-5.0
Q8TE73 Ciliary dynein heavy chain 5 2.4 5.79 pH4.8-4.6 pH4.8-4.6
Q8WXU2 Dyslexia susceptibility 1 candidate gene 1 protein 1.2 8.95 pH5.2-5.0 pH5.2-5.0
P68104 Elongation factor 1-alpha 1 35.8 9.1 pH7.6-7.4 pH7.6-7.4
P26641 Elongation factor 1-gamma (EF-1-gamma) 1 6.27 pH5.2-5.0 pH4.6-4.4
P13639 Elongation factor 2 3.2 6.42 6.2-6.0 pH6.0-5.8
Q14677 Clathrin interactor 1 (Epsin-4) (Epsin-related protein) 1.7 6.01 pH6.2-6.0 pH6.2-6.0
P15311 Ezrin (p81) (Cytovillin) (Villin-2) 4.7 5.95 pH6.0-5.8 pH6.0-5.8
Q5JRC9 Protein FAM47A 2.6 9.15 above pH7.5 above pH7.5
Q96AY3 FK506-binding protein 10 [Precursor] 3.8 5.26 pH5.4-5.2 pH5.4-5.2
Q16595 Frataxin, mitochondrial [Precursor] 6.8 5.94 pH4.8-4.6 pH4.6-4.4
Q5H8C1 FRAS1-related extracellular matrix protein 1 [Precursor] 2.7 5.5 pH4.6-4.4 salt washing
P32455 Interferon-induced guanylate-binding protein 1 1.2 5.97 pH7.6-7.4 pH7.2-7.0
Q8IWJ2 GRIP and coiled-coil domain-containing protein 2 1.3 5.08 above pH7.5 abovepH7.5
Q02153 Guanylate cyclase soluble subunit beta-1 (GCS-beta-1) 3.7 5.2 salt washing pH5.4-5.2
Q96N19 Integral membrane protein GPR137 2.5 8.78 salt washing pH4.8-4.6
P38646 Stress-70 protein, mitochondrial [Precursor] 150.7 5.44 pH5.6-5.4 pH5.6-5.4
P11021 78 kDa glucose-regulated protein precursor 2.7 5.01 pH5.2-5.0 pH5.2-5.0
P28001 Histone H2A type 1-E 244 11.05 pH6.8-6.6 pH7.6-7.4
P0C0S8 Histone H2A type 1 531.9 10.9 above 7.5 pH7.2-7.0
P62807 Histone H2B type 1-C/E/F/G/I 100 10.32 pH7.6-7.4 pH7.6-7.4
P62805 Histone H4 46.2 11.36 pH7.6-7.4 pH7.6-7.4
P82979 Nuclear protein Hcc-1 2.6 6.12 pH4.6-4.4 pH4.6-4.4
Q16836 Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1 8.38 pH7.4-7.2 pH7.0-6.8
Q8TBE9 N-acylneuraminate-9-phosphatase(NANP_human) 9.7 6.01 pH4.6-4.4 pH6.2-6.0
P31943 Heterogeneous nuclear ribonucleoprotein H (hnRNP H) 58.6 5.89 pH5.8-5.6 pH5.6-5.4
P52597 Heterogeneous nuclear ribonucleoprotein F (hnRNP F) 2 5.38 pH5.6-5.4 pH5.6-5.4
P61978 Heterogeneous nuclear ribonucleoprotein K (hnRNP K) 1.8 5.39 pH5.2-5.0 pH4.8-4.6
O43390 Heterogeneous nuclear ribonucleoprotein R (hnRNP R) 1.1 8.23 salt washing salt washing
P34931 Heat shock 70 kDa protein 1L 15.3 5.76 pH5.8-5.6 pH5.6-5.4
P07900 Heat shock protein HSP 90-alpha 13.8 4.94 pH6.6-6.4 pH4.4-4.2
P08107 Heat shock 70 kDa protein 1 7.7 5.48 pH5.4-5.2 pH5.2-5.0
P54652 Heat shock-related 70 kDa protein 2 6 5.56 pH5.6-5.4 pH5.6-5.4
P34932 Heat shock 70 kDa protein 4 1.2 5.18 pH5.2-5.0 pH4.8-4.6
P11142 Heat shock cognate 71 kDa protein 7.8 5.37 pH5.6-5.4 pH5.6-5.4
Q9Y3Y2 Uncharacterized protein C1orf77 1.6 12.24 above pH7.5 7.6-7.4
Q7Z6Z7 E3 ubiquitin-protein ligase HUWE1 2.2 5.1 above pH7.5 above pH7.5
P20810 Calpastatin 4.5 4.98 above pH7.5 above pH7.5
P63241 Eukaryotic translation initiation factor 5A-1 1.4 5.08 pH5.0-4.8 pH5.0-4.8
P01563 Interferon alpha-2 [Precursor] 1.3 5.99 pH6.0-5.8 pH6.0-5.8
Q12906 Interleukin enhancer-binding factor 3 1.3 8.86 salt washing pH5.2-5.0
Q14643 Inositol 1,4,5-trisphosphate receptor type 1 2.3 5.71 pH5.8-5.6 pH5.8-5.6
P29375 Histone demethylase JARID1A 1.1 6.42 above pH7.5 pH7.0-6.8
O94953 JmjC domain-containing histone demethylation protein 3B 34.1 6.72 pH6.8-6.6 above pH7.5
Q9HCJ3 Ribonucleoprotein PTB-binding 2 1.4 7.12 pH7.0-6.8 above pH7.5
P13645 Keratin, type I cytoskeletal 10 34 5.13 pH5.8-5.6 pH6.0-5.8
P13646 Keratin, type I cytoskeletal 13 3.6 4.91 pH7.6-7.4 pH7.6-7.4
P08779 Keratin, type I cytoskeletal 16 3.7 4.98 pH7.6-7.4 pH5.2-5.0
P12035 Keratin, type II cytoskeletal 3 2.1 8.16 pH5.6-5.4 pH5.6-5.4
P05787 Keratin, type II cytoskeletal 8 30 5.52 pH5.6-5.4 pH5.6-5.4
P00568 Adenylate kinase isoenzyme 1 11.1 8.73 above 7.5 pH7.2-7.0
O95069 Potassium channel subfamily K member 2 1.4 8.46 above pH7.5 pH7.2-7.0
Q9NQT8 Kinesin-like protein KIF13B 3.4 5.56 pH7.2-7.0 above pH7.5
P46013 Antigen KI-67 1.1 9.49 above pH7.5 pH6.6-6.4
O00139 Kinesin-like protein KIF2A 6.8 6.04 pH6.2-6.0 above pH7.5
Q9BVG8 Kinesin-like protein KIFC3 4.3 7.62 pH7.4-7.2 pH7.2-7.0
P05455 Lupus La protein 2.3 6.68 pH6.0-5.8 pH5.6-5.4
P20700 Lamin-B1 5.4 5.11 pH5.2-5.0 pH5.0-4.8
P02545 Lamin-A/C 16.3 6.57 pH6.2-6.0 pH5.6-5.4
Q14847 LIM and SH3 domain protein 1 1.6 6.61 pH6.8-6.6 pH4.6-4.4
Q6JVE6 Epididymal-specific lipocalin-10 [Precursor] 1.5 10.25 above pH7.5 above pH7.5
P07195 L-lactate dehydrogenase B chain 4.3 5.72 pH6.2-6.0 pH5.6-5.4
Q7L1W4 Leucine-rich repeat-containing protein 8D 1.5 7.76 7.6-7.4 pH5.2-5.0
Q9NX58 Cell growth-regulating nucleolar protein 1.3 9.57 pH4.8-4.6 pH6.0-5.8
Q9UPN3 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 1.6 5.27 pH7.0-6.8 above pH7.5
P27816 Microtubule-associated protein 4 1 5.32 pH5.0-4.8 pH4.6-4.4
P43243 Matrin-3 2.8 5.87 pH4.8-4.6 pH4.8-4.6
P41594 Metabotropic glutamate receptor 5 [Precursor] 2.9 8.09 pH5.8-5.6 pH5.6-5.4
P19105 Myosin regulatory light chain 2, nonsarcomeric 2.3 4.67 pH4.8-4.6 pH4.8-4.6
P49006 MARCKS-related protein 4 4.68 pH4.6-4.4 pH4.6-4.4
P60660 Myosin light polypeptide 6 22.2 4.56 above pH7.5 pH4.8-4.6
Q15746 Myosin light chain kinase, smooth muscle 5.85 pH6.20-6.0 above pH7.5
O95251 Histone acetyltransferase MYST2 1.4 9.01 pH4.8-4.6 pH7.0-6.8
P15531 Nucleoside diphosphate kinase A 3 5.83 pH5.6-5.4 pH5.2-5.0
P20929 Nebulin 1.4 9.1 salt washing pH5.2-5.0
P82970 Nucleosome-binding protein 1 1.8 4.5 pH4.4-4.2 pH4.4-4.2
Q9UNZ2 NSFL1 cofactor p47 1.2 4.99 pH4.6-4.4 pH4.6-4.4
Q02818 Nucleobindin-1 [Precursor] 6 5.09 pH5.2-5.0 pH5.2-5.0
Q96KK4 Olfactory receptor 10C1 8.64 above pH7.5 above pH7.5
Q9Y4L1 Hypoxia up-regulated protein 1 [Precursor] 1.2 5.07 pH5.0-4.8 pH4.8-4.6
Q9Y6V0 Protein piccolo 1.4 6.12 pH6.2-6.0 pH6.2-6.0
O95831 Apoptosis-inducing factor 1, mitochondrial [Precursor] 5.5 6.86 pH6.2-6.0 pH5.2-5.0
P30101 Protein disulfide-isomerase A3 [Precursor] 6.9 5.61 pH5.6-5.4 pH5.6-5.4
P41219 Peripherin 1.6 5.37 above pH7.5 above pH7.5
O43933 Peroxisome biogenesis factor 1 5.91 pH4.6-4.4 pH7.2-7.0
Q9NQP4 Prefoldin subunit 4 3 4.42 pH4.4-4.2 pH4.4-4.2
P78562 Phosphate-regulating neutral endopeptidase 1.8 8.91 salt washing pH5.2-5.0
Q9ULU4 Protein kinase C-binding protein 1 1.8 6.83 7.4-7.2 pH7.2-7.0
Q96MT3 Prickle-like protein 1 4.1 5.84 pH5.2-5.0 pH5.2-5.0
P17980 26S protease regulatory subunit 6A 13.3 5.13 pH5.2-5.0 pH7.6-7.4
Q15678 Tyrosine-protein phosphatase non-receptor type 14 8.45 above pH7.5 above pH7.5
P11498 Pyruvate carboxylase, mitochondrial [Precursor] 1.1 6.14 pH6.8-6.6 pH7.0-6.8
Q7Z5J4 Retinoic acid-induced protein 1 16.5 9.03 pH5.6-5.4 pH7.2-7.0
P43487 Ran-specific GTPase-activating protein 4.6 5.19 pH5.2-5.0 pH5.0-4.8
O76081 Regulator of G-protein signaling 20 5.4 6.48 pH6.6-6.4 pH6.6-6.4
Q99729 Heterogeneous nuclear ribonucleoprotein A/B 1.5 9.04 above pH7.5 ph4.8-4.6
P62263 40S ribosomal protein S14 1.3 10.08 pH6.2-6.0 pH7.6-7.4
Q92545 Transmembrane protein 131 [Fragment] 1.8 no info pH7.2-7.0 abovepH7.5
Q15413 Ryanodine receptor 3 5.45 pH7.2-7.0 abovepH7.5
Q92562 SAC domain-containing protein 3 1.5 6.46 pH7.2-7.0 above pH7.5
Q9Y5Y9 Sodium channel protein type 10 subunit alpha 2.8 5.67 pH6.4-6.2 pH6.4-6.2
Q9H190 Syntenin-2 17.8 9.15 pH7.6-7.4 pH4.0-3.8
O43175 D-3-phosphoglycerate dehydrogenase 159.5 6.31 pH6.6-6.4 pH5.2-5.0
O15047 Histone-lysine N-methyltransferase 1.5 5.07 pH5.2-5.0 pH5.2-5.0
P23246 Splicing factor, proline- and glutamine-rich 1.3 9.45 pH6.4-6.2 pH6.2-6.0
P84103 Splicing factor, arginine/serine-rich 3 1.1 11.64 above pH7.5 pH5.2-5.0
Q13813 Spectrin alpha chain, brain 7 5.22 pH5.0-4.8 pH5.4-5.2
Q01082 Spectrin beta chain, brain 1 4 5.39 pH5.0-4.8 pH6.2-6.0
Q13748 Tubulin alpha-2 chain 2 4.98 pH5.2-5.0 pH5.0-4.8
Q71U36 Tubulin alpha-1A chain 2.7 4.94 pH5.0-4.8 pH5.0-4.8
O75764 Transcription elongation factor A protein 3 9.32 abovepH7.5 pH5.6-5.4
P48643 T-complex protein 1 subunit epsilon 1.7 5.45 pH5.6-5.4 pH5.2-5.0
P49368 T-complex protein 1 subunit gamma 1.2 6.1 pH4.6-4.4 pH5.6-5.4
Q9UNS1 Timeless homolog 2.3 5.26 pH5.6-5.4 pH5.6-5.4
P11388 DNA topoisomerase 2-alpha 1.4 8.82 above pH7.5 pH7.2-7.0
P55327 Tumor protein D52 1.1 4.94 pH5.0-4.8 pH4.8-4.6
O43399 Tumor protein D54 3 5.26 pH5.0-4.8 pH5.0-4.8
P09493 Tropomyosin-1 alpha chain 1.6 4.69 pH4.4-4.2 pH4.4-4.2
P07951 Tropomyosin beta chain 21.7 4.66 pH4.8-4.6 pH4.8-4.6
P06753 Tropomyosin alpha-3 chain 1.4 4.68 pH4.8-4.6 pH4.8-4.6
Q9Y4A5 Transformation/transcription domain-associated protein 1.4 8.49 above pH7.5 above pH7.5
P26368 Splicing factor U2AF 65 kDa subunit 1.5 9.19 salt washing pH4.8-4.6
Q00341 Vigilin 3.2 6.43 pH6.6-6.4 pH 6.6-6.4
P08670 Vimentin 1.3 5.06 pH4.8-4.6 pH4.8-4.6
P18206 Vinculin 8.3 5.51 pH5.2-5.0 pH5.6-5.4
Q9P1Q0 Vacuolar protein sorting-associated protein 54 2.7 6.1 pH5.6-5.4 pH5.2-5.0
P04275 Von Willebrand factor [Precursor] 2.6 5.06 pH5.2-5.0 pH5.2-5.0
Q9P2L0 WD repeat protein 35 1.1 5.98 pH5.2-5.0 pH4.2-4.0
Q8NI36 WD repeat protein 36 21.6 7.33 pH7.4-7.2 abovepH7.5
O15213 WD repeat protein 46 23.7 9.69 pH7.6-7.4 abovepH7.5
Q8IZP6 RING finger protein 113B 1.1 7.54 pH5.6-5.2 pH7.6-7.4
Q5TAX3 Zinc finger CCHC domain-containing protein 11 1.2 8.3 pH7.0-6.8 pH7.6-7.4
Q9H4I2 Zinc fingers and homeoboxes protein 3 2.5 5.73 pH7.6-7.4 pH7.0-6.8
Q9UL59 Zinc finger protein 214 3.7 8.89 pH7.6-7.4 pH7.2-7.0
O15015 Zinc finger protein 646 1.1 6.97 pH7.0-6.8 above pH7.5