Table 2.
Abundant tags for nuclear transcripts in MTAL: Comparison with whole-kidney data
| Tag | MTAL | Kidney | Databank entry |
|---|---|---|---|
| TTCATGGTTC | 38 | 2* | Uromodulin (Tamm–Horsfall) (L33406) |
| TAAGATGAGA | 38 | 4* | ESTs, similar to mouse uromodulin (L33406) |
| TTGATATTTG | 25 | 10* | ESTs, similar to Hu Na,K-ATPase α1-subunit (J05096) |
| GTTCTCACCC | 25 | 11* | ESTs |
| GAAACTCTCT | 24 | 1* | Creatine kinase B (M74149) |
| GTGACTGGGT | 23 | 35* | Cytochrome c oxidase subunit IV (X54691) |
| TTGTGTCAGT | 22 | 7* | Na,K-ATPase β1-subunit (X61433) |
| CTTAACTTCC | 21 | 23 | Na,K-ATPase γ-subunit (Q04646) |
| ACCGACCGCA | 21 | 8* | Integral membrane protein 2B1 (U76253) |
| GCTCATTGGA | 18 | 1* | ESTs |
| CGCAGTGGCA | 17 | 10 | ESTs, similar to human ubiquinol cytochrome c reductase core I (L16842) |
| TCTCCATATC | 17 | 4* | ESTs, similar to mouse ATP synthase β-subunit (AF0030559) |
| AAGAAATACA | 17 | 7* | Adenine nucleotide translocase-2 (U27316) |
| GCCTGGAGAA | 17 | 11 | ESTs, similar to mouse ribosomal protein L41 (U93862) |
| GCTTTCAGCA | 14 | 0* | ESTs, similar to human extracellular proteinase inhibitor homologue (X63187) |
| ACTCTGGAGT | 14 | 8 | Follistatin-like protein (L75822) |
| TTGTTTGCCA | 13 | 12 | ESTs, similar to mouse H+ ATP synthase subunit c (L19737) |
| CTTTCTCTAT | 13 | 1* | ESTs, similar to uromodulin (L33406) |
| AACCCACCAG | 13 | 0* | Kidney chloride channel CIC-K1 (AF124848) |
| AAATAAAGTT | 13 | 2* | Lactate dehydrogenase 2, B chain (X51905) |
| CTGGGTACTA | 12 | 4* | Lymphocyte differentiation antigen (M18184) |
| ACAAAGTTTG | 12 | 7 | ATP synthase α-subunit (L01062) |
| TTTGCCGGCA | 11 | 9 | Ubiquitin (X51703) |
| GCGGCGAGGT | 11 | 1* | No match |
| TGACGTGCCG | 11 | 32* | Glyceraldehyde-3-phosphate dehydrogenase (M32599) |
| TGCGTATGGC | 10 | 7 | Ribosomal protein L28 (X74856) |
| AGGAGCTGGC | 10 | 9 | H+ ATP synthase subunit c (L19737) |
| ATGCTAGTCT | 10 | 10 | Ribosomal protein S29 (L31609) |
| CCCACTGCAC | 10 | 9 | No match |
| GCATTTGCCA | 10 | 0* | No match |
| GTCGTTCTGG | 10 | 5 | Protein synthesis elongation factor 1α (M22432) |
| AACTGTGCAG | 10 | 2* | ESTs, similar to human ribosomal protein L17 (X52839) |
| AATGATGAGG | 10 | 16 | Heat shock protein 70 (M19141) |
| TTCCATCCCT | 10 | 9 | Cytochrome c oxidase subunit VIa (L06465) |
The table lists tags detected ≥10 times (mitochondrial tags were excluded from the report) in the MTAL library (7,438 tags sequenced). For comparison, data obtained at the whole-kidney level also are indicated and normalized to a similar number of tags. Asterisks indicate significant differences, assessed by Monte Carlo trial, between abundance in MTAL and kidney libraries. Additional data are available at http://www-dsv.cea.fr/thema/get/sade.html