Table 3.
Abundant tags for nuclear transcripts in OMCD: Comparison with whole-kidney data
| Tag | OMCD | Kidney | Databank entry |
|---|---|---|---|
| GTGGCAGTGG | 129 | 11* | ESTs, similar to rat aquaporin-2 (D13906)† |
| TGGCAGTGGG | 41 | 0* | No match |
| TTATAATTTG | 39 | 1* | ESTs |
| TGACTCCCTC | 22 | 19 | B2 repetitive sequence |
| ACCGACCGCA | 19 | 8* | Integral membrane protein 2B1 (U76253) |
| AAGTTTAAAT | 18 | 1* | Thymosin β-4 (X16053) |
| AGCAAGCAGG | 18 | 12 | β-Actin (X03672) |
| CAAAAAGCTA | 17 | 2* | ESTs, similar to rat ribosomal protein L11 (X62146) |
| GTTCTCACCC | 15 | 11 | ESTs |
| CAGAAGAAGT | 14 | 3* | Endogenous murine leukemia virus (M17326) |
| CAGAAGCAGT | 14 | 19 | Endogenous murine leukemia virus sequence (L08395) |
| TGACCAAGGC | 13 | 1* | 11β-hydroxysteroid dehydrogenase type 2 (X90647) |
| AAATAAAGTT | 13 | 2* | Lactate dehydrogenase 2, B chain (X51905) |
| CTGGTGTCCT | 13 | 2* | Endothelial monocyte-activating polypeptide I (U41341) |
| AGAAGCAGTG | 12 | 0* | No match |
| ACATTCCTTA | 12 | 0* | EST 693054 (AA253657)† |
| ACTCTGGAGT | 12 | 8 | Follistatin-like protein (L75822) |
| GCTTTCAGCA | 12 | 0* | ESTs, similar to human extracellular proteinase inhibitor homologue (X63187) |
| TTCCATCCCT | 12 | 9 | Cytochrome c oxidase subunit VIa (L06465) |
| TGATGCCCTC | 12 | 5* | B2 repetitive sequence |
| GGTGCCACCC | 11 | 6 | Insulinoma/ribosomal protein S15 gene (M33330) |
| GTGACTGGGT | 11 | 36* | Cytochrome c oxidase subunit IV (X54691) |
| CAAGCAGCCC | 11 | 4* | Kidney-specific cadherin (AF016271) |
| AACAACCCAA | 10 | 1* | ESTs |
| TACACACACA | 10 | 0* | ESTs |
| AGCCAGCAGA | 10 | 0* | No match |
| TCTCCATATC | 10 | 4 | ESTs, similar to mouse ATP synthase β-subunit (AF030559) |
| GCCTGGAGAA | 10 | 11 | ESTs, similar to mouse ribosomal protein L41 (U93862) |
| GCTCATTGGA | 10 | 1* | ESTs |
| TGCGGTGACT | 10 | 1* | Ribosomal protein L7 (X57961) or S24 (X60289) |
| AGGAATCCAG | 10 | 9 | TDD5 (U52073) |
| TGACGCCCTC | 10 | 12 | B2 repetitive sequence |
The table lists tags detected ≥10 times (mitochondrial tags were excluded from the report) in the OMCD library (7,563 tags sequenced). For comparison, data obtained at the whole-kidney level also are indicated and normalized to a similar number of tags. Additional data are available at http://www-dsv.cea.fr/thema/get/sade.html
*
Significant difference, as determined by Monte Carlo trial, between abundance in OMCD and kidney libraries.
† EST match confirmed by sequencing the corresponding cDNA IMAGE clone.