Table 1.
Primers for conventional DREAM PCR | ||
Forward | Reverse | |
DREAM | 5'-CCGGCTAAGGAAGTGACAAA-3' | 5'-CAAAGGCGTTGAAGAGGAAG-3' |
nDREAM | 5'-GAAGGAGGGTATCAAGTG-3' | 5'-TAAATGAGTTTGAAGGTGTC-3' |
Primers for SYBR green assay real-time PCR | ||
Forward | Reverse | |
c-fos | 5'-TAAATGAGTTTGAAGGTGTC-3' | 5'-ACAGGAACCCTCTAGGGAAGA-3' |
Oligonucleotides for the synthesis of siRNAs | ||
Sense | Antisense | |
siRNA1 | 5'-AAGGACAGGATCCACTTGACCTATAGTGAGTCGTATTA-3' | 5'AAGGTCAAGTGGATCCTGTCCTATAGTGAGTCGTATTA3' |
siRNA2 | 5'-AAGGTGAACTTGGTCTGGGCCTATAGTGAGTCGTATTA3' | 5'-AAGGCCCAGACCAAGTTCACCTATAGTGAGTCGTATTA-3' |
siRNA3 | 5'-AAGTAGAGATTAAAGGCCCACTATAGTGAGTCGTATTA-3' | 5'-AAGTGGGCCTTTAATCTCTACTATAGTGAGTCGTATTA-3' |
siRNA4 | 5'-AAGCTCATGATGTTCTCATCCTATAGTGAGTCGTATTA-3' | 5'-AAGGATGAGAACATCATGAGCTATAGTGAGTCGTATTA-3' |
siRNA5 | 5'-AAGTGTAGCAATCTGTTCACTATAGTGAGTCGTATTA-3' | 5'-AAGTGAACAGATTGCTACACTATAGTGAGTCGTATTA-3' |
siRNA-GFP | 5'-ATGAACTTCAGGGTCAGCTTGCTATAGTGAGTCGTATTA-3' | 5'-CGGCAAGCTGACCCTGAAGTTCTATAGTGAGTCGTATTA-3' |
T7 | 5'-TAATACGACTCACTATAG-3' |
siRNA3 (binding in the coding region of exon 6) and siRNA4 (spanning the non-coding exons 8 and 9) were used to interfere with endogenous DREAM mRNA and to analyze downstream target genes of DREAM gene regulation like pdyn and c-fos. Two different primers for DREAM are given. DREAM, downstream regulatory element antagonist modulator; GFP, green fluorescence protein; siRNA, small interfering RNA.