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. 2008 May 9;95(4):1902–1912. doi: 10.1529/biophysj.108.129957

FIGURE 4.

FIGURE 4

DFT optimized geometry and frequencies for νasym and νsym normal modes for isolated and interacting E222 at the B3LYP 6-311+G(2p,2d) level. (A) Bond angle and lengths for a geometry optimized model including hydrogen-bonding interactions to water Z223 and S205. Displacement vectors and calculated frequency of νasym are shown. (B) Displacement vectors and frequency of νsym for interacting E222. (C) Bond angle and lengths for a geometry optimized model excluding hydrogen-bonding interactions but maintaining dihedral angles taken from the x-ray geometry, and vectors and calculated frequency of νasym. (D) Displacement vectors and frequency of νsym for isolated E222