TABLE 2.

Comparison of models from TASSER_2.0, TASSER and PROSPECTOR_3.5

			〈RMSD to the native〉, Å[SD*]
	Num†	ID (%)‡	§	¶	‖	MT_all**
Easy	1802	19	5.60 [4.33]	3.42 [2.55]	3.27 [2.35]	4.02 [2.80]	3.86 [2.61]
Medium	167	16	8.69 [5.16]	5.39 [3.54]	4.71 [2.77]	5.82 [3.61]	5.09 [2.87]
Hard	622	13	11.87 [5.66]	8.37 [4.57]	7.69 [4.17]	8.92 [4.48]	8.24 [4.12]
All	2591	17	7.30 [5.44]	4.73 [3.84]	4.42 [3.46]	5.31 [3.92]	4.99 [3.57]

^*Standard deviation.

^†Number of target proteins in each category.

^‡Average sequence identity of target-template sequences.

Average RMSD to the native structure of the initial PROSPECTOR_3.5 templates^§, TASSER^¶, and TASSER_2.0^‖ models over the same aligned regions provided from PROSPECTOR_3.5.

Average RMSD to the native structure of TASSER** and TASSER_2.0^†† models over the entire molecule.