Table 1. Gene-specific primers used in this study.
Primer Name | Sequence (5′ to 3′) | Target Region |
(1) MHCI-R3 | ASGTAYYTCBBCAGCCACT | Initial exon 3 genomic amplification |
(2) IgNC-F1 | TGYGAGCTGAGGAAAGATGGGAGCATAG | 3′ RACE |
(3) IgNC-F2 | TTACCARTGTGCTTATGATGGGAGGGAC | 3′ RACE (Nested) |
(4) MHC17H3-5R-R1 | TTCATGCAGTCCAAAGGCAGCAG | 5′ RACE; Genomic fragment |
(5) MHC17H3-5R-R2 | TCTTCTGCCTTGCTTCTGTCAAATATGGAG | 5′ RACE (Nested) |
(6) MHC1-Gr2-F1 | ACCGAGAGGGTTGAGCTGGAGAG | Genomic fragment |
(7) MHCI-Int-R1 | TGAGGCTGASAGAGTGTAATCCTCCC | Iguaninae exon3/intron3 fragment |
(8) MHC1-Int2-F2 | AGRTGTRTGTAATATATCATCCAGG | Intron3/exon4 fragment (All Iguaninae) |
(9) MHC1-R4 | CAGRCYGGYRTGMTCCACRCGSCAC | Intron3/exon4 fragment (Amcr; Cosu) |
(10) MHC1-R6 | TCTCCTTGGGGTAGAAGCCRTC | Intron3/exon4 fragment (Cyco; Ctde; Cyca; Ctcl; Cyri) |
Numbers before primer refer to location in the gene as indicated by arrows in Figure 1.
Footnote: See Materials and methods for Iguaninae taxa abbreviations.