Table 2.
Data collection and refinement statistics for Lhx3LIM1+2–Isl1LBD
MAD data sets | Native data seta | |||
---|---|---|---|---|
Peak | Remote | Inflection | ||
Space group | C2 | |||
Unit cell parameters (Å, deg) | a=119, b=62.2, c=51.9, β=91.6 | |||
Wavelength (Å) | 1.282 | 1.170 | 1.283 | 1.54 |
Resolution (Å) | 2.30 (2.34–2.30) | 2.30 (2.34–2.30) | 2.30 (2.34–2.30) | 2.05 |
Mosaicity (deg) | 1.05 | 1.05 | 1.05 | 1.04 |
No. of unique reflections | 14 610 | 14 313 | 14 339 | 23 109 |
Completeness (%) | 85.4 (54.1) | 83.5 (47.5) | 83.7 (48.9) | 96.5 (78.1) |
Redundancy | 6.4 (4.8) | 6.1 (4.5) | 6.3 (4.6) | 3.5 (2.1) |
Rmergeb | 0.045 (0.218) | 0.045 (0.243) | 0.042 (0.215) | 0.051 (0.388) |
Average I/σ(I) | 15.2 (7.0) | 14.8 (6.2) | 15.3 (7.3) | 13.4 (2.4) |
Phasing statistics | ||||
Resolution range (Å) | 30–2.3 | |||
Zn sites/asymmetric unit | 8 | |||
FOMMADc | 0.66 | |||
FOMRESOLVEd | 0.7 | |||
Model refinement | ||||
Rcryste | 0.214 (0.287) | |||
Rfreef | 0.254 (0.346) | |||
No. of reflections used in refinement | 21 921 | |||
No. of reflections in the test set | 1188 (5.1%) | |||
Protein atoms (including Zn) | 2377 | |||
Water molecules | 48 | |||
RMSD bond length (Å) | 0.02 | |||
RMSD bond angle (deg) | 1.5 | |||
Mean protein B factor, all non-H atoms (Å2) | 43.1 | |||
Mean water B factor (Å2) | 43.5 | |||
Estimated standard uncertainties | ||||
Coordinates, based on residual R (Å) | 0.2 | |||
Coordinates, based on Rfree (Å) | 0.18 | |||
Ramachandran plot, residues in | ||||
Favoured regions (%) | 93.9 | |||
Additional allowed regions (%) | 6.1 | |||
Disallowed regions (%) | 0 | |||
Values for the highest resolution shell are given in parentheses. | ||||
aNative set data from Bhati et al (2008). | ||||
bRmerge=∑h∑i∣Ii−〈I〉∣/∑h∑iIi. | ||||
cFigure of merit after SOLVE phasing. | ||||
dFigure of merit after RESOLVE. | ||||
eRcryst=∑∣∣Fobs∣−∣Fcalc∣∣/∑∣Fobs∣, where ∣Fobs∣ and ∣Fobs∣ are the observed and calculated structure factor amplitudes. | ||||
fRfree is Rcryst for the 5% validation set. |