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. Author manuscript; available in PMC: 2009 Jun 20.
Published in final edited form as: J Mol Biol. 2008 Apr 25;379(5):936–952. doi: 10.1016/j.jmb.2008.04.043

Table 2.

Primers used in this study.

Primer name Sequence

ara5’ cgtcttactccatccagaaaaacagg
araC+5R ccatgatttctctacccc
flgA +417/+436 cgtcagtttgcgcgatctcg
flgJ 5’ RT-PCR gatcaccaccactgaatacg
flgK +100/+81 aacccgcaacgttataattg
flgK +42/+23 R ggcgttaagtccgctcatgg
flgK −105/−86 F tcagcaaaacctacagcgcg
flgM +24/+5 R aggtgaggtacggtcaatgc
flgM +61/+45 tggtttcgcgcgtctgg
flgM5′-UP gaaccgtcgattctgatg
fliA +27/+8 accttcagcggtatacagtg
fliA +5/−15 ttcacgataaacagccctgc
fliA +720/+697 ctataacttacccagtttggtgcg
fliA −156/−137 tctggctgattttattctgc
fliA −225/−209 gcggctggtaagagagc
fliA#4 tagtctatacgttgtgcggc
fliC+39R caacagcgacaggctgtttg
fliC13 gttctttgtcaggtctgtc
fliD +4/−16 ccatgccttcttcctttttg
fliD −196/−177 F gtaacccttgtatcggcacc
fliD+190R aacgcggtatttgccgtc
araBfliA F actgtttctccatacctgtttttctggatggagtaagacgatgaattcactgtataccgc
araDfliA R ttcatcaacgcgccccccatgggacgcgtttttagaggcactataacttacccagtttgg
flgAtetR aaccgtcgattctgatgggaatattcttattaacctataattaagacccactttcacatt
flgJtetR cagcaaaacctacagcgcgaatctcgacaatctcttttaattaagacccactttcacatt
flgKtetA cgttaagtccgctcatggcgtgattaatcaagctggacatctaagcacttgtctcctg
flgMtetA tgaatatctcatcggcagccgcgacaaaatctttacacaactaagcacttgtctcctg
fliAPtetA taaacagccctgcgttaaatgagttatcggcatgattatcctaagcacttgtctcctg
fliAPtetA2 atccgtttctacagagggttctatcgaaggaataaggctactaagcacttgtctcctg
fliAPtetR aaaaggcgctacaggttacataagtgaaataacccttcttttaagacccactttcacatt
fliAtetR2 ttatagccttattccttcgatagaaccctctgtagaaacgttaagacccactttcacatt
ParaBtetR gtcttactccatccagaaaaacaggtatggagaaacagtattaagacccactttcaca
ParaBtetA gtccatatcgaccaggacgacagagcttccgtctccgcaactaagcacttgtctcctg