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. Author manuscript; available in PMC: 2009 Jun 6.
Published in final edited form as: J Mol Biol. 2008 Apr 9;379(3):627–643. doi: 10.1016/j.jmb.2008.04.008

Table 1. Normalized information content (specificity) of transcription factors in B. subtilis and E. coli with 7+ reported binding sites.

The left column in each species shows mean IC values computed after sampling 100 times taking only 30% of the available sites.

Bacillus subtilis
#sites normUIC sampled_normUIC
ComK 120 0.72 0.75
PhoP 65 0.62 0.68
CcpA 48 0.84 0.88
MtrB 41 1.1 1.2
SpoIIID 39 0.69 0.86
Spo0A 38 0.64 0.8
TnrA 37 0.98 1.03
AbrB 34 0.52 0.78
CodY 34 0.66 0.9
DegU 37 0.94 0.91
GerE 31 0.71 0.88
Fur 26 0.85 0.95
PurR 24 0.78 1
SpoVT 16 1.4 1.4
DnaA 16 1.06 1.28
Hpr 14 0.75 1.21
PerR 13 0.81 1.25
ResD 12 0.85 1.25
GlnR 12 1.07 1.35
SnR 12 0.99 1.35
CssR 12 0.95 1.34
YlbO 12 0.89 1.39
AraR 11 0.91 1.28
RocR 11 1.22 1.35
CtsR 10 1.06 1.28
ComA 10 0.97 1.35
GlpP 10 1.2 1.35
LexA 10 0.94 1.38
Rok 10 1.34 1.34
CcpC 9 1.26 1.27
Fnr 8 1.26 1.38
YycF 8 1.2 1.32
CitT 8 0.91 1.27
PucR 7 0.83 1.28
Escherichia coli
#sites normUIC sampled_normUIC
CRP 207 0.36 0.39
Fis 121 0.29 0.35
IHF 78 0.5 0.57
ArcA 77 0.48 0.57
NarL 76 0.71 0.78
FNR 75 0.56 0.63
Lrp 54 0.28 0.42
Fur 47 0.8 0.9
H-NS 34 0.45 0.64
CpxR 33 0.55 0.71
LexA 23 0.69 0.84
MetJ 23 1.04 1.16
OmpR 20 0.55 0.78
ArgR 18 0.66 0.88
SoxS 18 0.57 0.79
GlpR 18 0.55 0.8
PhoP 18 0.58 0.82
PhoB 17 0.54 0.81
TyrR 17 0.6 0.82
PurR 16 0.83 1.06
MarA 16 0.44 0.81
MalT 15 0.55 0.83
NarP 14 0.93 1.12
AraC 13 0.59 0.98
FruR 12 0.78 1.04
TrpR 10 1.03 1.14
Nac 10 0.66 1
CytR 10 0.51 0.85
NagC 10 0.68 0.97
GntR 10 0.71 0.99
FadR 10 0.7 0.98
IclR 10 1.02 1.25
OxyR 9 0.5 1.03
CysB 8 0.68 1.14
DnaA 8 0.71 1.12
IscR 8 0.62 1.09
Mlc 7 0.9 1.16
DeoR 7 0.73 1.15
GalR 7 0.83 1.15
GalS 7 0.93 1.21