Table 1. Normalized information content (specificity) of transcription factors in B. subtilis and E. coli with 7+ reported binding sites.
The left column in each species shows mean IC values computed after sampling 100 times taking only 30% of the available sites.
Bacillus subtilis | |||
---|---|---|---|
#sites | normUIC | sampled_normUIC | |
ComK | 120 | 0.72 | 0.75 |
PhoP | 65 | 0.62 | 0.68 |
CcpA | 48 | 0.84 | 0.88 |
MtrB | 41 | 1.1 | 1.2 |
SpoIIID | 39 | 0.69 | 0.86 |
Spo0A | 38 | 0.64 | 0.8 |
TnrA | 37 | 0.98 | 1.03 |
AbrB | 34 | 0.52 | 0.78 |
CodY | 34 | 0.66 | 0.9 |
DegU | 37 | 0.94 | 0.91 |
GerE | 31 | 0.71 | 0.88 |
Fur | 26 | 0.85 | 0.95 |
PurR | 24 | 0.78 | 1 |
SpoVT | 16 | 1.4 | 1.4 |
DnaA | 16 | 1.06 | 1.28 |
Hpr | 14 | 0.75 | 1.21 |
PerR | 13 | 0.81 | 1.25 |
ResD | 12 | 0.85 | 1.25 |
GlnR | 12 | 1.07 | 1.35 |
SnR | 12 | 0.99 | 1.35 |
CssR | 12 | 0.95 | 1.34 |
YlbO | 12 | 0.89 | 1.39 |
AraR | 11 | 0.91 | 1.28 |
RocR | 11 | 1.22 | 1.35 |
CtsR | 10 | 1.06 | 1.28 |
ComA | 10 | 0.97 | 1.35 |
GlpP | 10 | 1.2 | 1.35 |
LexA | 10 | 0.94 | 1.38 |
Rok | 10 | 1.34 | 1.34 |
CcpC | 9 | 1.26 | 1.27 |
Fnr | 8 | 1.26 | 1.38 |
YycF | 8 | 1.2 | 1.32 |
CitT | 8 | 0.91 | 1.27 |
PucR | 7 | 0.83 | 1.28 |
Escherichia coli | |||
---|---|---|---|
#sites | normUIC | sampled_normUIC | |
CRP | 207 | 0.36 | 0.39 |
Fis | 121 | 0.29 | 0.35 |
IHF | 78 | 0.5 | 0.57 |
ArcA | 77 | 0.48 | 0.57 |
NarL | 76 | 0.71 | 0.78 |
FNR | 75 | 0.56 | 0.63 |
Lrp | 54 | 0.28 | 0.42 |
Fur | 47 | 0.8 | 0.9 |
H-NS | 34 | 0.45 | 0.64 |
CpxR | 33 | 0.55 | 0.71 |
LexA | 23 | 0.69 | 0.84 |
MetJ | 23 | 1.04 | 1.16 |
OmpR | 20 | 0.55 | 0.78 |
ArgR | 18 | 0.66 | 0.88 |
SoxS | 18 | 0.57 | 0.79 |
GlpR | 18 | 0.55 | 0.8 |
PhoP | 18 | 0.58 | 0.82 |
PhoB | 17 | 0.54 | 0.81 |
TyrR | 17 | 0.6 | 0.82 |
PurR | 16 | 0.83 | 1.06 |
MarA | 16 | 0.44 | 0.81 |
MalT | 15 | 0.55 | 0.83 |
NarP | 14 | 0.93 | 1.12 |
AraC | 13 | 0.59 | 0.98 |
FruR | 12 | 0.78 | 1.04 |
TrpR | 10 | 1.03 | 1.14 |
Nac | 10 | 0.66 | 1 |
CytR | 10 | 0.51 | 0.85 |
NagC | 10 | 0.68 | 0.97 |
GntR | 10 | 0.71 | 0.99 |
FadR | 10 | 0.7 | 0.98 |
IclR | 10 | 1.02 | 1.25 |
OxyR | 9 | 0.5 | 1.03 |
CysB | 8 | 0.68 | 1.14 |
DnaA | 8 | 0.71 | 1.12 |
IscR | 8 | 0.62 | 1.09 |
Mlc | 7 | 0.9 | 1.16 |
DeoR | 7 | 0.73 | 1.15 |
GalR | 7 | 0.83 | 1.15 |
GalS | 7 | 0.93 | 1.21 |