Table 2.
In vivo and in vitro vector integration sites distribution
Intergenic, % | Intragenic, % | Perigenic, % | |
---|---|---|---|
GLOBE total BM (n = 61) | 38.7 | 53.2 | 8.1 |
GLOBE Ter119+ BM (n = 34) | 52.9 | 38.2 | 8.8 |
GLOBE Ter119− BM (n = 46) | 23.9 | 65.2 | 10.9 |
GLOBE in vitro (n = 57) | 27.6 | 56.9 | 15.5 |
LV-GFP in vitro* (n = 202) | 28.1 | 57.9 | 14.0 |
Control sequences (n = 61) | 49.2 | 39.3 | 11.5 |
Distribution of GLOBE integrations sites unambiguously mapped in total BM, Ter119+, and Ter119− sorted cells of th3/+ transplanted mice, and GLOBE and LV GFP integrations in cultured lineage-negative BM cells. Integrations were distributed as inside (intragenic), outside (intergenic), or at a distance of <30 kb upstream or downstream (perigenic) from known genes (University of California Santa Cruz annotation). Control sequences were obtained from a randomly cloned library of MseI/NarI-restricted, LM-PCR-amplified murine BM DNA.
*LV-GFP integrations in lineage-negative BM cells from a previously published collection (10).