Table 3.
Tagging SNP |
Variant |
Genotype frequency |
Armitage trend test |
||
Familial CRC |
Sporadic CRC |
'Hyper-normal' controls |
|||
rs279941 | GG | 0.74 | 0.82 | 0.76 | *p = 0.78 |
GT | 0.25 | 0.17 | 0.22 | #p = 0.27 | |
TT | 0.01 | 0.01 | 0.02 | ||
rs183963 | AA | 0.46 | 0.39 | 0.43 | *p = 0.56 |
AT | 0.39 | 0.49 | 0.41 | #p = 0.97 | |
TT | 0.15 | 0.12 | 0.15 | ||
rs157266 | GG | 0.74 | 0.80 | 0.76 | *p = 0.87 |
GA | 0.25 | 0.19 | 0.19 | #p = 0.23 | |
GT | 0.01 | 0.02 | 0.05 | ||
rs1886927 | GG | 0.81 | 0.84 | 0.82 | *p = 0.98 |
GT | 0.19 | 0.15 | 0.17 | #p = 0.67 | |
TT | 0.00 | 0.01 | 0.01 |
* comparison of genotype frequencies between familial CRC and hypernormal controls
# comparison of genotype frequencies between sporadic CRC and hypernormal controls