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. 2008 Jul 21;9:70. doi: 10.1186/1471-2350-9-70

Table 3.

Genotype frequencies of SLC10A2 tagging SNPs


Tagging SNP

Variant
Genotype frequency

Armitage trend
test

Familial CRC
Sporadic CRC
'Hyper-normal'
controls
rs279941 GG 0.74 0.82 0.76 *p = 0.78
GT 0.25 0.17 0.22 #p = 0.27
TT 0.01 0.01 0.02
rs183963 AA 0.46 0.39 0.43 *p = 0.56
AT 0.39 0.49 0.41 #p = 0.97
TT 0.15 0.12 0.15
rs157266 GG 0.74 0.80 0.76 *p = 0.87
GA 0.25 0.19 0.19 #p = 0.23
GT 0.01 0.02 0.05
rs1886927 GG 0.81 0.84 0.82 *p = 0.98
GT 0.19 0.15 0.17 #p = 0.67
TT 0.00 0.01 0.01

* comparison of genotype frequencies between familial CRC and hypernormal controls

# comparison of genotype frequencies between sporadic CRC and hypernormal controls