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. 2008 Aug 4;14:1429–1436.

Table 1. Characterization of mutations and novel unclassified variants identified in this study.

 Case #  Gene  Mutation Characterization of variant Frequency in control Amino acid Conservation  Domain In-silico analysis
Polyphen SIFT PMut
5
RPE65
c.271C>T (R91W)*
Missense/Pathogenic






 
 
c.858+1G>T (IVS8+1G>T)*
Splicing/Pathogenic






11
RPGRIP1
c.1295C>T (S432F)
Missense/Unclassified
0.003
Some species
Coiled coil region
Damaging
Not tolerated
Pathological
6
RPGRIP1
c.1802C>G (S601W)
Missense/Unclassified
<0.01
Some species
C2 domain
Damaging
Not tolerated
Pathological
13
RPGRIP1
c.1892A>T (H631P)
Missense/Pathogenic
<0.01
Well conserved
C2 domain
Damaging
Tolerated
Pathological
 
 
c.3560_3566delAAGGCCG
Frameshift/Pathogenic






12
RPGRIP1
c.3170A>T (H1057L)
Missense/Unclassified
0.006
Some species
RPGR interacting domain
Damaging
Tolerated
Pathological
17
CRB1
c.998G>A (G333D)
Missense/Pathogenic
<0.01
Well conserved
EGF-like domain
Damaging
Not tolerated
Neutral
    c.1576C>T (R526X) Nonsense/Pathogenic

Mutations and novel unclassified variants are presented. The asterisk indicates that this has been previously reported elsewhere as a pathologic mutation. The sequence variations without the asterisk are novel ones with further analyses supporting or excluding pathogenicity including frequency in normal control, amino acid conservation and in-silico prediction using softwares. We classified H631P in RPGRIP1 and G333D in CRB1 among five missense variants as pathogenic mutations, but other missense ones as unclassified variants.