TABLE 3.
Sequence alignment and interaction status of Dev boxes
| Dev box | Dev box sequencea | Interaction with DevR∼P | Reference or source |
|---|---|---|---|
| D1 | TTAGGGCCGGAAGTCCCCAA | + | This study |
| D2 | TGGCGGACGAATGACCCCAG | + | This study |
| D3 | GCCGGGACTTCAGGCCCTAT | + | This study |
| D4 | TTGGGGTGTAACCTCCCCAG | − | This study |
| Rv3134c D | ATAAGGACTAACGGCCCTCA | + | 5 |
| Rv3134c P | GTGGGGACCAACGCCCCTGG | + | 5 |
| Rv3134c 1 | ACCTGGACGAGCCACCCGTG | − | 5 |
| Rv3134c 4 | ACGGGATGTATCCGCCCCAG | − | 5 |
| hspX D | ACAGGGTCAATGGTCCCCAA | + | 5 |
| hspX C | GCGCGGACAAATGGCCCGCG | + | 5 |
| hspX P | TCGGGGACTTCTGTCCCTAG | + | 5 |
| DevR consensus motif | TTSGGGACTWWAGTCCCSAA | 10 |
a
The conserved G4, G5, G6, and C8 nucleotides are shown in boldface. S represents G or C, and W represents A or T. C, D, and P are abbreviations for Dev box designations in Rv3134c and hspX genes.