Table 5. Amino acids at variable sites of the HA gene segment of A/H3N2 influenza viruses from the ‘N-lineage’, clade a, clade b, and singleton isolates s1, s2, s3, and s4 (Figure 6), with differing amino acids in bold.
HA site | N-lineage | s1 | s2 | s3 | s4 | Clade a | Clade b |
6 | N | N | N | N | N | N | I |
45 (C) | S | S | S | S | N | S | S |
48 (C) | T | T | T | T | I | T | T |
50 (C) | G | G | E | G | G | E | G |
53 (C) | D | D | D | D | N | D | D |
112 | V | V | V | V | I | V | V |
140 (A) | K | K | K | K | K | I | K |
142 (A*) | R | G | R | R | R | R | G |
144 (A) | N | D | N | N | N | N | N |
157 (B) | L | L | L | L | L | L | S |
173 (D) | K | K | K | K | E | K | E |
193 (B*) | F | F | F | F | S | F | F |
199 | S | S | S | S | P | S | S |
225 | N | N | N | N | D | N | N |
275 (C*) | G | G | G | G | D | G | G |
375 | N | N | D | N | D | D | D |
450 | R | R | R | R | R | K | K |
Antigenic sites are specified A–E (listed in parentheses) and sites that have been identified as undergoing positive selection denoted by an asterisk (*) [37].