Table 3. miRNAs expressed in B. mori a.
| Name | Matched prediction candidatesc | Sequence (5′ to 3′) | Total clones | PDS | DS | DBS | BKS | TAS | BS | NLS | FLS | MLS | LFLS | SS | PPS | PS | MS |
| bmo-miR-1 | H2 | UGGAAUGUAAAGAAGTGTGGA | 1 | 1 | |||||||||||||
| bmo-miR-7 | H92 | UGGAAGACUAGUGAUUUUGUUGU | 1 | 1 | |||||||||||||
| bmo-miR-8 | H101 | UAAUACUGUCAGGUAAAGAUGUC | 3 | 1 | 2 | ||||||||||||
| bmo-miR-9a | H110 | UCUUUGGUUAUCUAGCUGUAUGA | 1 | 1 | |||||||||||||
| bmo-miR-10 | H3 | UACCCUGUAGAUCCGAAUUUGU | 2 | 2 | |||||||||||||
| bmo-miR-13 | H11 | UAUCACAGCCAUUUUUGACGAGUU | 2 | 1 | 1 | ||||||||||||
| bmo-miR-31 | H39 | GGCAAGAAGUCGGCAUAGCUGU | 2 | 2 | |||||||||||||
| bmo-miR-71 | H95 | UGAAAGACAUGGGUAGUGAGAUGU | 1 | 1 | |||||||||||||
| bmo-miR-71* | H95 | UCUCACUACCUUGUCUUUCAUG | 1 | 1 | |||||||||||||
| bmo-miR-77 | H99 | UCAUCAGGCCAUAGUUGUCCA | 1 | 1 | |||||||||||||
| bmo-miR-92 | H104 | AAUUGCACCAAUCCCGGCCUGC | 1 | 1 | |||||||||||||
| bmo-miR-263ab | H22 | AAUGGCACUGGAAGAAUUCACGGG | 5 | 1 | 4 | ||||||||||||
| AAUGGCACUGGAAGAAUUCACGG | 5 | 3 | 2 | ||||||||||||||
| AAUGGCACUGGAAGAAUUCACG | 11 | 1 | 7 | 3 | |||||||||||||
| AUGGCACUGGAAGAAUUCACG | 1 | 1 | |||||||||||||||
| AAUGGCACUGGAAGAAUUCA | 4 | 4 | |||||||||||||||
| bmo-miR-263a* | H22 | CUCUUAGUGGCAUCAC | 1 | 1 | |||||||||||||
| bmo-miR-263b | H23 | CUUGGCACUGGGAGAAUUCA | 1 | 1 | |||||||||||||
| bmo-miR-275 | H24 | UCAGGUACCUGAAGUAUCGCG | 1 | 1 | |||||||||||||
| bmo-miR-278 | – | UCGGUGGGAUCUUCGUCCGUUU | 1 | 1 | |||||||||||||
| bmo-miR-279 | H27 | UGACUAGAUCCACACUCAU | 2 | 1 | 1 | ||||||||||||
| bmo-miR-282*b | H29 | GACAUAGCCUGAUAGAGGUUACG | 2 | 1 | 1 | ||||||||||||
| ACAUAGCCUGAUAGAGGUUACG | 1 | 1 | |||||||||||||||
| bmo-miR-285 | H31 | UAGCACCAUUCGAAUUCAGUGC | 4 | 1 | 1 | 1 | 1 | ||||||||||
| bmo-miR-306 | – | UCAGGUACUAGGUGACUCUGA | 3 | 2 | 1 | ||||||||||||
| bmo-miR-317b | – | AGUGAACACAGCUGGUGGUAU | 2 | 2 | |||||||||||||
| UGAACACAGCUGGUGGUA | 1 | 1 | |||||||||||||||
| bmo-miR-768 | – | GAGGAUGAAAUUAUCGAGCUAC | 1 | 1 | |||||||||||||
| bmo-miR-iab-4-3p | H113 | CGGUAUACCUUCAGUAUACGUAAC | 1 | 1 | |||||||||||||
| bmo-miR-1920 | – | GCGUGCGCGUAGCGAGUUC | 1 | 1 | |||||||||||||
| bmo-miR-1921 | – | UGAGAUUCAGCCUUGCGCCAGGU | 1 | 1 | |||||||||||||
| bmo-miR-1922 | – | GUUCGUCGUGGAUUUAAGA | 1 | 1 | |||||||||||||
| bmo-miR-1923 | S105 | UAAUCGCGUACCGUUGCAUAGCCGUGGC | 1 | 1 | |||||||||||||
| bmo-miR-2008b | S147 | CGGCGAGAGGGACGCUCCUUAGAGUCG | 1 | 1 | |||||||||||||
| AGGGACGCUCCUUAGAGUCGGGUU | 1 | 1 | |||||||||||||||
| GCGAGAGGGACGCUCCUUAGA | 1 | 1 | |||||||||||||||
| bmo-miR-2009 | S127 | GACCCGAAAGAUGGUGA | 1 | 1 | |||||||||||||
| bmo-miR-2009* | S127 | GAUGGAGGAUCGUAGCA | 1 | 1 | |||||||||||||
| bmo-miR-2010 | S140 | CACCACGGAAACACAAUAAUUG | 1 | 1 | |||||||||||||
| bmo-miR-1926 | S104 | AGGAAUUCUAAAGCAAAAAGG | 1 | 1 | |||||||||||||
| bmo-miR-2007 | S122 | UAAAAACGUGCGUUGGCCG | 1 | 1 | |||||||||||||
| bmo-miR-1924 | S45 | UGAUGUCCGCGGAGGUGUAGUG | 1 | 1 | |||||||||||||
| bmo-miR-1925 | S20 | UUUUCAACAUGGUAUGGAC | 1 | 1 | |||||||||||||
| Total clones | 77 | 3 | 1 | 3 | 1 | 2 | 4 | 4 | 1 | 33 | 5 | 9 | 7 | 2 | 2 |
a
Pre-diapaused egg(PDS); Diapaused egg(DS); Diapause-broken egg(DBS); Blastokinesis stage egg(BKS); Trachea appearing stage egg(TAS); Bluish egg(BS); Newly-hatched larva(NLS); Fourth-instar larva(FLS); Molting larva(MLS); Late fifth-instar larva(LFLS); Spinning larva(SS); Pre-pupa (PPS); Pupa (PS); Moth (MS).
b
The sequences have length heterogeneity found on the 5′ and/or 3′ end, and different mature forms from the same stem of precursor are also listed.
c
H, ID of miRNAs predicted based on homolog conservation comparison with known Metazoa miRNAs; S, ID of putative miRNAs predicted based on Sequence & Structural features filters.