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. 2008 Aug;7(8):1541–1555. doi: 10.1074/mcp.M800007-MCP200

Table II.

Comparison of calculated and experimental mass with that identified from the 2D gel analysis

The calculated mass was obtained based on the amino acid sequence in GenBank™. The experimental mass was taken from the results of data from the literature and company data sheets.

Protein Calculated mass Experimental mass Mass on 2D gel
kDa kDa kDa
Cytoskeleton and cytoskeleton-associated
    Drebrin 1 isoform a 71.9 116/125 125/132/134/131
    β-Actin 42 42 46/32
    Spinophilin 89.6 120–140 131
    α-Actinin-1 103 107 123
    α-Actinin-4 105 100–115 120, 123
    Capping protein α 33 34 35
    Ezrin 69.4 81 100
    Cofilin I 18.7 19–21 13.25
    Glial fibrillary acidic protein 49.5 50 47
    α-Tubulin 50 57 75
Signaling
    14-3-3ζ 31 30 26/26/34/32/32/31
    14-3-3ε 28 31 30
    Inhibitor-2 of protein phosphatase 2A 31–33 30 48/48/46
Chaperones
    Hsp90α 85.1 90 113/111
    Heat shock protein gp96 precursor 92.7, 90.3 100 125/122
    Valosin-containing protein 90 97 118
Protein translation and conjugation
    Eukaryotic elongation factor 1γ 50.5 46 58
Metabolism
    Inorganic pyrophosphatase 33.1 33 35
    Glyceraldehyde-3-phosphate dehydrogenase 36.2 38 36, 38
Proteases
    Neurolysin (EC 3.4.24.16) 81.3 80 96
    Prolyl endopeptidase (prolyl oligopeptidase, EC 3.4.21.26) 81.6 79.6 96
Membrane and lipid binding
    Rab GDP dissociation factor inhibitor α 51 50 78
    Chain A, crystal structure of brain fatty acid-binding protein oleic acid 14.8 13–14 11
    Annexin V 35.8 38 38