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. 2008 Jul 21;9:315. doi: 10.1186/1471-2105-9-315

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Copyright © 2008 Ma et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Observed and predicted run times of the EPISNPmpi program on Minnesota Supercomputing Institute's 2.6 GHz IBM BladeCenter Linux cluster (Blade) and the SGI Altix XE 1300 Linux cluster system with 2.66 GHz Intel Clovertown processor (Calhoun). The observed run times (circles representing Blade and squares representing Calhoun) matched well with the predicted run times under ideal speedup and scalability (solid line representing Blade and dotted line representing Calhoun). Analyses in this figure used a hypothetical GWAS data set with 50,000 SNPs and 2000 individuals.