Table 2.

TaqMan probes used for 3C and PCR-stop analysis

9889 R*	(FAM)TCTTCAT(BHQ-1)GCAGAGAGAAAC ACCAGGC
25713 R*	(FAM)AAGTGTTGACT(BHQ-1)CATGGTTTG CTAGTTTGC
26297 F*	(FAM)CCTCCTAACCT(BHQ-1)AACAATAAC CCACAGCAC
36990 F*	(FAM)CTGAAGGCAGT(BTQ-1)CATCCAGTA CAAAGCA
45235 F*	(FAM)CCACAAAT(BHQ-1)CAAAGCGATGC GGTAT
45289 F	(FAM)ATCAGGGAGAAT(BHQ-1)TGCAGAT TAAGGAAACA
50215 F*	(FAM)AACGCCGT(BHQ-1)GAAGAACGTG GACAAC
50309 F*	(FAM)AGGCAAGCAAAGGCT(BHQ-1)GGG GTCT
52045 R	(FAM) CAGCAGAGCCACGGGGT(BHQ-1) CAGT
52974 F	(FAM)AGGTAGGTGT(BHQ-1)CCTTCTCTG TCCTCCG
53663 F*	(FAM)CTGGTGTCCT(BHQ-1)GCTCTGGTT TCTGC
ERCC3 4573 F*	(FAM)TGTCTTGCCATGT(BHQ-1)GGTAAA TTACTGCG

5′–3′ sequences are presented. FAM, a fluorescent dye at the 5′-ends of the probes; BHQ-1, a quencher dye inside the probes at T. Probe names are assigned as in Table 1. *Denotes the marked probes used for PCR-stop analysis.