Table 2.
Patient | Sample | Interval (day) | No. of repeatsa | rRNA-SNP | MG191-SNP | ||
MG307 | MG309 | MG338 | |||||
64 | 1 | 11 | 7, 6 | 12, 11, 10 | 7, 6 | 2 | 4 |
2 | 7, 6 | 12, 11, 10 | 7, 6 | 2 | 4 | ||
91 | 1 | 34 | 7 | 8 | 4 | 3 | 3 |
2 | 7 | 8 | 4 | 3 | 3 | ||
111 | 1 | 36 | 9, 8 | 13 | 8, 9 | 2 | 51 |
2 | 9, 8 | 13 | 8, 9 | 2 | 51 | ||
123 | 1 | 21 | 5 | 9 | 7, 8 | 4 | 43 |
2 | 5, 6 | 9 | 7 | 4 | 43 | ||
129 | 1 | 12 | 6 | 16, 15 | 8, 7 | 2 | 39 |
2 | 6 | 16, 15 | 8 | 2 | 39 | ||
137 | 1 | 26 | 5 | 9 | 5 | 2 | 8 |
2 | 5 | 9 | 5 | 2 | 8 | ||
168 | 1 | 15 | 6 | 10 | 8, 7 | 3 | 44 |
2 | 6 | 10 | 8, 7 | 3 | 44 | ||
170 | 1 | 23 | 6, 5 | 10 | 7 | 2 | 3 |
2 | 6, 5 | 10 | 7 | 2 | 3 | ||
198 | 1 | 19 | 5 | 15, 16, 17 | 9, 8 | 2 | 4 |
2 | 5 | 15, 16, 17 | 9, 8 | 2 | 4 | ||
199 | 1 | 10 | 9, 8 | 10 | 5 | 6 | 8 |
2 | 9, 8 | 10 | 5 | 6 | 8 |
a Underlined numbers indicate repeats confirmed by sequencing of cloned PCR products (See additional file 2). For specimens containing mixed sequences, the genotypes are listed in the order from predominant to minor type.