Table 3.

Functional classification of ESTs and NRs from Actinidia.

Bin Code	Bin Name	% Actinidia ESTsa	% Actinidia NR sequencesb	% Arabidopsis sequences	% Potato NRs
1	PS	2.18	1.22	0.73	0.75
2	major CHO metabolism	0.86	0.72	0.37	0.54
3	minor CHO metabolism	1.02	0.75	0.45	0.41
4	glycolysis	1.03	0.60	0.23	0.27
5	fermentation	0.38	0.21	0.05	0.07
6	Gluconeogenesis/glyoxylate cycle	0.14	0.11	0.04	0.02
7	OPP	0.25	0.22	0.11	0.12
8	TCA/org. transformation	0.64	0.55	0.27	0.27
9	mitochondrial electron transport/ATP synthesis	0.82	0.71	0.49	0.34
10	cell wall	3.20	2.27	1.90	1.11
11	lipid metabolism	1.78	1.91	1.49	1.32
12	N-metabolism	0.08	0.16	0.09	0.08
13	amino acid metabolism	2.64	2.00	1.07	1.18
14	S-assimilation	0.10	0.08	0.05	0.05
15	metal handling	2.53	0.59	0.34	0.20
16	secondary metabolism	3.02	2.09	1.64	1.42
17	hormone metabolism	2.16	1.99	2.27	1.69
18	co-factor and vitamin metabolism	0.10	0.14	0.16	0.15
19	tetrapyrrole synthesis	0.28	0.26	0.17	0.16
20	stress	4.08	3.33	3.48	2.64
21	redox. regulation	1.02	1.00	0.70	0.64
22	polyamine metabolism	0.29	0.12	0.05	0.07
23	nucleotide metabolism	0.59	0.68	0.57	0.49
24	biodegradation of xenobiotics	0.04	0.08	0.09	0.06
25	C1-metabolism	0.19	0.19	0.14	0.12
26	miscellaneous	4.72	4.59	5.38	3.69
27	RNA	7.86	9.86	10.88	6.82
28	DNA	1.60	2.05	1.99	1.25
29	protein	18.61	16.94	13.31	9.59
30	signalling	3.42	4.77	4.46	3.10
31	cell	3.23	3.04	2.57	1.68
33	development	1.29	1.58	2.24	1.33
34	transport	3.62	3.99	3.49	2.58
35	not assigned	26.23	31.21	38.72	55.79

^a Actinidia NRs were assigned to a Mapman (Thimm et al., 2004) bin according to their nearest Arabidopsis BLAST hit. ESTs belonging to the Actinidia NR were then assigned to the same bin.

^b Potato and Arabidopsis functional assignments were as described [27,100]