Table 4. Comparative results from the specific DNA fragments.
Identification no. DNA-fragment | Specificity (%) | DNA sequence comparative resulta | Species | BLAST type | Identity (%) | E-value |
first clade specific | ||||||
EnCl.031G9 | 100 | partial operon for PQQ pyrroloquinoline quinone biosythesis | Klebsiella pneumoniae MGH 78578 | nb | 81 | 0 |
EnCl.012G4 | 100 | partial pyrroloquinoline quinone | Pseudomonas putida F1 | nb | 70 | −93 |
EnCl.025A10 | 100 | nitrate reductase alpha-subunit | Enterobacter sp. 638 | nb | 89 | 0 |
EnCl.018F3 | 100 | partial lactaldehyde dehydrogenase | Enterobacter sp. 638 | nb | 85 | 0 |
EnCl.012B11 | 100 | TonB-dependent siderophore receptor | Enterobacter sp. 638 | nb | 85 | 0 |
EnCl.006A12 | 100 | major facilitator superfamily MFS (efflux pump) | Enterobacter sp. 638 | nb | 79 | 0 |
EnCl.001D12 | 100 | partial 1-acyl-sn-glycerol-3-phosphate acyltransferase | Enterobacter sp. 638 | nb | 82 | −169 |
EnCl.032B2 | 100 | putative helix-turn-helix, AraC type | Klebsiella pneumoniae MGH 78578 | bx | 56 | −47 |
EnCl.030E5 | 100 | hypothetical protein KPN_03581 | Klebsiella pneumoniae MGH 78578 | bx | 66 | −69 |
EnCl.020F8 | 100 | protein tyrosine kinase | Escherichia coli O157:H7 EDL933 | bx | 62 | −120 |
EnCl.011G11 | 100 | amino-terminal domain similar to transcription regulators | Listeria innocua Clip11262 | bx | 26 | −19 |
EnCl.005B7 | 100 | response regulator receiver protein | Enterobacter sp. 638 | bx | 32 | −3 |
EnCl.001C12 | 100 | putative sulfatase | Aeromonas salmonicida A449 | bx | 66 | −125 |
second clade specific | ||||||
EnCl.021G7 | 100 | partial putative glutathione S-transferase | Klebsiella pneumoniae MGH 78578 | nb | 73 | −89 |
EnCl.010E8 | 100 | partial oxidoreductase alpha- (molybdopterin) subunit | Enterobacter sp. 638 | nb | 75 | −134 |
cluster 1 specific | ||||||
EnCl.015H7 | 100 | putative outer membrane usher protein | Klebsiella pneumoniae MGH 78578 | bx | 45 | −100 |
EnCl.005F6 | 100 | partial hypothetical protein | Klebsiella pneumoniae MGH 78578 | nb | 77 | −129 |
EnCl.005F4 | 99 | partial hypothetical protein | Klebsiella pneumoniae MGH 78578 | nb | 77 | −128 |
EnCl.018G3 | 96 | trypsin-like serine proteases | Yersinia bercovieri ATCC 43970 | bx | 63 | −65 |
outbreak I specific | ||||||
EnCl.001G3 | 99 | putative pili assembly chaperone | Serratia proteamaculans 568 | bx | 74 | −54 |
EnCl.001D8 | 99 | putative GTP-binding factor | Escherichia coli 536 | nb | 90 | 0 |
EnCl.027C11 | 97 | hypothetical protein BL0477 | Bifidobacterium longum NCC2705 | bx | 83 | −35 |
EnCl.014H7 | 95 | KilA N-terminal domain, N1R/P28 DNA binding | Acanthamoeba polyphaga mimivirus | bx | 46 | 2 |
(For sequences see, Supplement Table S2)
best hit in GenBank; nb: nucleotide-nucleotide blast; bx: nucleotide-protein blast (no hit with nucleotide-nucleotide blast).