Table 1.
Selected distances between irons and atoms in their first coordination sphere for our QM/MM model of the reduced form: MMOHred and the experimental structure.a
Distance (Å) | Model QM/MM | Model QM | Crystal protomer β | Deviation QMMM/Protomer β | Deviation QM/Protomer β | Deviation QMMM/QM | Deviation Protomer β/Protomer α |
---|---|---|---|---|---|---|---|
Fe2-Fe1 | 3.289 | 3.636 | 3.267 | 0.022 | 0.369 | −0.347 | −0.046 |
O3-Fe1 | 2.047 | 2.120 | 2.064 | −0.017 | 0.056 | −0.073 | −0.069 |
O5-Fe1 | 2.039 | 2.066 | 2.283 | −0.244 | −0.217 | −0.027 | 0.051 |
N7-Fe1 | 2.158 | 2.219 | 2.196 | −0.038 | 0.023 | −0.061 | −0.083 |
O11-Fe1 | 2.475 | 2.246 | 2.315 | 0.160 | −0.069 | 0.229 | −0.126 |
O13-Fe1 | 2.109 | 2.140 | 2.184 | −0.075 | −0.044 | −0.031 | −0.301 |
O14-Fe1 | 2.312 | 2.346 | 2.528 | −0.216 | −0.182 | −0.034 | 0.148 |
O6-Fe2 | 2.097 | 2.098 | 2.295 | −0.198 | −0.197 | −0.001 | 0.015 |
O8-Fe2 | 1.950 | 1.964 | 2.070 | −0.120 | −0.106 | −0.014 | 0.073 |
O10-Fe2 | 2.220 | 2.292 | 2.366 | −0.146 | −0.074 | −0.072 | −0.071 |
O11-Fe2 | 2.265 | 2.163 | 2.262 | 0.003 | −0.099 | 0.102 | −0.188 |
N12-Fe2 | 2.110 | 2.148 | 2.162 | −0.052 | −0.014 | −0.038 | −0.008 |
O14-Fe2 | 2.910 | 3.201 | 2.654 | 0.256 | 0.547 | −0.291 | −0.022 |
RMSD (A) | 0.147 | 0.213 | 0.148 | 0.121 |