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. Author manuscript; available in PMC: 2008 Aug 18.
Published in final edited form as: Biochemistry. 2006 Jun 27;45(25):7844–7853. doi: 10.1021/bi0526074

Table 2.

Thermodynamics of the binding-coupled folding of TRAP

Change in Solvent Accessible Surface Area (ΔASA):
   Absence of folding a
      Polar 239 Å2
      Nonpolar 378 Å2
   Presence of folding b
      Polar 1328 Å2
      Nonpolar 1916 Å2
Change in Heat Capacity (ΔCp):
   Expected from tryptophan burial c -88 cal mol-1 K-1
   Experimental -370 cal mol-1 K-1
   Upper limit for folding d -427 cal mol-1 K-1
Binding-Coupled Folding (ℜ):
   ITC 17-24 residues/monomer
   NMR e 19 residues/monomer
a

ΔASA for the burial of tryptophan measured from the structure 1QAW (14); see methods.

b

ΔASA for the burial of tryptophan and the 19 residues that exhibit ligand-dependent line broadening, measured from the structure 1QAW (14); see methods.

c

Expected heat capacity change in the absence of folding calculated from ΔASA a using equation 1.

d

Upper limit for the heat capacity change in the presence of folding if all the residues go from an extended structure to a folded structure calculated from ΔASA b using equation 1.

e

Number of residues for which the NMR resonances are exchange-broadened beyond detection in apo-TRAP but are present in holo-TRAP and are located in the tryptophan or RNA-binding sites.