Table 1.
Nucleotide Homology in tRNA Genes – M. terricolor vs. M. m. domesticus (C57BL/6).
| Gene |
*Position in AY172335 (M. m. domesticus) |
±Position in M. terricolor |
Changes in M. terricolor |
Identities |
|---|---|---|---|---|
| tRNA-Phe | 1–68 68 nt |
1–66 66 nt |
1 substitution 2 deletions |
65/68 96% |
| tRNA-Val | 1025–1093 69 nt |
1021–1089 69 nt |
3 substitutions | 66/69 96% |
| tRNA-Leu | 2676–2750 75 nt |
2672–2746 75 nt |
2 substitutions | 73/75 97% |
| tRNA-Ile | 3706–3774 69 nt |
3702–3770 69 nt |
5 substitutions | 64/69 93% |
| tRNA-Gln |
#C3772–3842 71 nt |
C3768–3838 71 nt |
1 substitution | 70/71 99% |
| tRNA-Met | 3845–3913 69 nt |
3843–3911 69 nt |
0 changes | 69/69 100% |
| tRNA-Trp | 4950–5016 67 nt |
4948–5014 67 nt |
3 substitutions | 64/67 96% |
| tRNA-Ala |
#C5018–5086 69 nt |
C5016–5084 69 nt |
4 substitutions | 65/69 94% |
| tRNA-Asn |
#C5089–5159 71 nt |
C5088–5158 71 nt |
5 substitutions | 65/71 92% |
| tRNA-Cys |
#C5192–5257 66 nt |
C5190–5256 67 nt |
1 insertion | 66/67 99% |
| tRNA-Tyr |
#C5260–5326 67 nt |
C5258–5324 67 nt |
1 substitution | 66/67 99% |
| tRNA-Ser |
#C6870–6938 69 nt |
C6868–6936 69 nt |
2 substitutions | 67/69 97% |
| tRNA-Asp | 6942–7011 70 nt |
6940–7008 69 nt |
1 deletion 3 substitutions |
66/70 94% |
| tRNA-Lys | 7700–7764 65 nt |
7697–7760 64 nt |
1 deletion | 64/65 98% |
| tRNA-Gly | 9391–9458 68 nt |
9387–9454 68 nt |
4 substitutions | 64/68 94% |
| tRNA-Arg | 9808–9875 68 nt |
9804–9871 68 nt |
2 substitutions | 66/68 97% |
| tRNA-His | 11545–11612 68 nt |
11541–11608 68 nt |
5 substitutions | 63/68 93% |
| tRNA-Ser2 | 11613–11671 59 nt |
11609–11667 59 nt |
5 substitutions | 54/59 92% |
| tRNA-Leu2 | 11672–11742 71 nt |
11667–11739 73 nt |
2 insertions 2 substitutions |
69/73 95% |
| tRNA-Glu |
#C14071–14139 69 nt |
C14069–14137 69 nt |
0 changes | 69/69 100% |
| tRNA-Thr | 15289–15355 67 nt |
15287–15353 67 nt |
1 substitution | 66/67 99% |
| tRNA-Pro |
#C15356–15422 67 nt |
C15354–15421 68 nt |
1 insertion 4 substitutions |
63/68 93% |
Gene classification from Mouse Genome Informatics.
*
Numbering and classification from M. m. domesticus strain C57BL/6J sequence (Bayona-Bafaluy et al., 2003).
#
C = sequence on complementary (-) strand.