Table 3.

Nucleotide Homology in Protein-Coding Genes – M. terricolor vs. M. m. domesticus (C57BL/6J; # AY172335).

Gene	*Position in AY172335 (M. m. domesticus)	±Position in M. terricolor	Changes in M. terricolor	% Identity
ND1	2751–3707 957 nt	2747–3703 957 nt	110 base substitutions 10 amino acid changes	89% nucleotide 97% amino acid
ND2	3914–4951 1038 nt	3912–4949 1038 nt	144 base substitutions 30 amino acid changes	86% nucleotide 91% amino acid
CO I	5328–6872 1545 nt	5326–6870 1545 nt	182 base substitutions 3 amino acid changes	88% nucleotide 99 % amino acid
CO II	7013–7696 684 nt	7010–7693 684 nt	86 base substitutions 0 amino acid changes	87% nucleotide 100% amino acid
ATP8	7766–7969 204 nt	7762–7965 204 nt	21 base substitutions 7 amino acid changes	90% nucleotide 90% amino acid
ATP6	7927–8607 681 nt	7923–8603 681 nt	79 base substitutions 4 amino acid changes	88% nucleotide 98% amino acid
CO III	8607–9390 784 nt	8603–9386 784 nt	89 substitutions 5 amino acid changes	88% nucleotide 98% amino acid
ND3	9459–9806 348 nt	9455–9802 348 nt	47 base substitutions 5 amino acid changes	86% nucleotide 96% amino acid
ND4L	9877–10173 297 nt	9873–10169 297 nt	51 base substitutions 6 amino acid changes	83% nucleotide 94% amino acid
ND4	10167–11544 1378 nt	10163–11540 1378 nt	170 base substitutions 28 amino acid changes	88% nucleotide 94% amino acid
ND5	11742–13565 1824 nt	11740–13572 1833 nt	257 base substitutions 9 insertions 41 amino acid changes	86% nucleotide 93% amino acid
ND6	#C13552–14070 519 nt	C13550–14068 519 nt	58 base substitutions 13 amino acid changes	89% nucleotide 92% amino acid
mt Cyt b	14145–15288 1144 nt	14143–15286 1144 nt	146 base substitutions 7 amino acid changes	87% nucleotide 98% amino acid

Gene Abbreviations: ND, NADH dehydrogenase; CO, cytochrome c oxidase; ATP, ATP Synthase; mt Cyt b, cytochrome b.