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. 2008 Jul 30;5:16. doi: 10.1186/1742-4682-5-16

Table 3.

Positional nucleotide usage frequencies in 113 Species

log(-C) C1+G1 C3+G3 C2+G2 C2+T2 C1+T1 G2+T2 C3+T3 G1+T1 G3+T3 A3+C3 A1+C1 A3+G3 A2+C2 A1+G1 A2+G2 A2+T2 A3+T3 A1+T1
A1+T1 -100.0 -38.6 -38.3 -8.9 -7.4 -4.5 -3.6 -1.9 -0.5 0.5 1.9 3.6 4.5 7.4 8.9 38.3 38.6 100.0
A3+T3 -38.6 -100.0 -24.9 -4.6 -6.9 -2.7 -4.0 -0.4 -2.0 2.0 0.4 4.0 2.7 6.9 4.6 24.9 100.0 38.6
A2+T2 38.3 -24.9 -100.0 -7.1 -12.8 -2.9 -2.3 -1.1 -0.2 0.2 1.1 2.3 2.9 12.8 7.1 100.0 24.9 38.3
A2+G2 -8.9 -4.6 -7.1 -100.0 -3.0 -7.1 -5.4 -11.2 -0.5 0.5 11.2 5.4 7.1 3.0 100.0 7.1 4.6 8.9
A1+G1 -7.4 -6.9 -12.8 -3.0 -100.0 -0.2 -3.7 -0.2 -0.7 0.7 0.2 3.7 0.2 100.0 3.0 12.8 6.9 7.4
A2+C2 -4.5 -2.7 -2.6 -7.1 -0.2 -100.0 -0.8 -2.4 -0.2 0.2 2.4 0.8 100.0 0.2 7.1 2.9 2.7 4.5
A3+G3 -3.6 -4.0 -2.3 -5.4 -3.7 -0.8 -100.0 -1.3 -1.0 1.0 1.3 100.0 0.8 3.7 5.4 2.3 4.0 3.6
A1+C1 -1.9 -0.4 -1.1 -11.2 -0.2 -2.4 -1.3 -100.0 -0.6 0.6 100.0 1.3 2.4 0.2 11 2 1.1 0.4 1.9
A3+C3 -0.5 -2.0 -0.2 -0.5 -0.7 -0.2 -1.0 -0.6 -100.0 100.0 0.6 1.0 0.2 0.7 0.5 0.2 2.0 0.5

G3+T3 0.5 2.0 0.2 0.5 0.7 0.2 1.0 0.6 100.0 -100.0 -0.6 -1.0 -0.2 -0.7 -0.5 -0.2- -2.0- -0.5
G1+T1 1.9 0.4 1.1 11.2 0.2 2.4 1.3 100.0 0.6 -0.6 -100.0 -1.3 -2.4 -0.2 -11.2 -1.1 -0.4 -1.9
C3+T3 3.6 4.0 2.3 5.4 3.7 0.8 100.0 1.3 1.0 -1.0 -1.3 -100.0 -0.8 -3.7 -5.4 2.3 4.0 -3.6
G2+T2 4.5 2.7 2.9 7.1 0.2 100.0 0.8 2.4 0.2 -0.2 -2.4 -0.8 -100.0 -0.2 -7.1 -2.9 -2.7 -4.5
C1+T1 7.4 6.9 12.8 3.0 100.0 0.2 3.7 0.2 0.7 -0.7 -0.2 -3.7 -0.2 -100.0 -3.0 -12.8 -6.9 -7.4
C2+T2 8.9 4.6 7.1 100.0 3.0 7.1 5.4 11.2 0.5 -0.5 -11.2 -5.4 -7.1 -3.0 -100.0 -7.1 -4.6 -8.9
C2+G2 38.3 24.9 100.0 7.1 12.8 2.9 2.3 1.1 0.2 -0.2 -1.1 -2.3 -2.9 -12.8 -7.1 -100.0 -24.9 -38.3
C3+G3 38.6 100.0 24.9 4.6 6.9 2.7 4.0 0.4 2.0 -2.0 -0.4 -4.0 -2.7 -6.9 -4.6 -24.9 -100.0 -38.6
C1+G1 100.0 38.6 38.3 8.9 7.4 4.5 3.6 1.9 0.5 -0.5 -1.9 -3.6 -4.5 -7.4 -8.9 -38.3 -38.6 -100.0

C: Significance of correlation. – sign was added to negative correlations. log (-0) was regarded to be 100