Table 2.

Bootstrap support values for basal branches of all methods applied.

Software		ProfDist				PAUP*			MrBayes	RAxML
Model		ITS2				Modeltest		-	Estimated
Analysis		NJ	PNJ	prePNJ	strPNJ	NJ	ML	MP	B	ML
Nodes	a	99	95	1001	100	91	-	82	0.86	-
	b	96	96	1001	96	99	93	86	1.00	98
	c	88	88	95	88	90	-	63	0.72	-
	d	100	99	1001	100	100	92	100	1.00	96
	e	62	55	53	60	-	-	62	0.97	64
	f	100	100	1001	100	100	99	100	1.00	100
	g	87	91	88	96	86	67	80	0.98	93
	h	99	99	1001	99	100	100	100	1.00	100
	i	90	90	92	84	93	88	85	0.99	89
	j	97	98	1001	98	93	91	91	0.99	98
	k	97	96	1001	95	96	88	83	1.00	99
Figure		3					4

The table supplements Fig. 3 and Fig. 4. Node "g" supports a monophyletic DO group and is printed in bold letters. Software used: ProfDist and PAUP*. Models of substitution: ITS2 = GTR with ITS2 substitution matrix, Modeltest: TVM+I+G with estimated parameters. Phylogenetic analysis: NJ = neighbour-joining, PNJ = profile neighbour-joining, prePNJ = profile neighbour-joining with predefined profiles, strPNJ = sequence-structure profile neighbour-joining, ML = maximum likelihood, B = Bayesian analysis (posterior probabilities), MP = maximum Parsimony. ¹Predefined profiles for profile neighbour-joining.