TABLE 3.
Details of the 26 Giardia genotypes identified in this study, assemblage A and B consensus sequences, and the 24 novel genotypesa
| Assemblage (total no. of isolates) | Isolate name | No. of isolates | GenBank accession no. | Base change(s) from the consensus sequence |
|---|---|---|---|---|
| A (58) | ||||
| Calf consensus | 24 | EU274404 | ||
| Human consensus | 13 | EU274390 | ||
| Calf 4 | 1 | EU274409 | G-368-A | |
| Calf 5 | 1 | EU274412 | T-162-A | |
| Calf 6 | 1 | EU274413 | C-288-T; A-39-G | |
| Calf 9 | 1 | EU274414 | T-423-C; C-161-T | |
| Calf 10 | 1 | EU274403 | A-380-G; A-245-T | |
| Calf 11 | 1 | EU274415 | A-286-G; T-199-C | |
| Calf 15 | 1 | EU274406 | T-243-C; A-154-G | |
| Calf 17 | 1 | EU274407 | C-230-T; A-116-G | |
| Calf 48 | 1 | EU274408 | G-216-A; A-121-G | |
| Calf 53 | 1 | EU274410 | A-431-G | |
| Calf 57 | 1 | EU274411 | A-175-G; −20-T; C-161-T | |
| Human 10 | 1 | EU275983 | A-31-G; G-474-A; A-195-G | |
| Human 17 | 1 | EU274392 | G-98-A | |
| Human 26 | 1 | EU274394 | C-233-T | |
| Human 27 | 1 | EU274395 | T-78-C | |
| Human 28 | 1 | EU274396 | A-305-G; A-170-G | |
| Human 30 | 1 | EU274398 | T-387-C | |
| Human 33 | 1 | EU274399 | T-16-C | |
| Human 35 | 1 | EU274400 | A-172-G; C-77-T | |
| Human 36 | 1 | EU274401 | A-31-G; A-361-C | |
| Human 39 | 1 | EU274402 | G-314-A | |
| B (12) | ||||
| Calf consensus | 5 | EU274405 | ||
| Human consensus | 4 | EU274397 | ||
| Human 1 | 1 | EU274389 | A-63-G; T-228-C; C-375-T | |
| Human 16 | 1 | EU274391 | A-63-G; T-228-C; C-375-T; T-297-C; C-211-T; C-67-T | |
| Human 25 | 1 | EU274393 | A-63-G; T-228-C; C-375-T; T- 297-C |
a
Nucleotide substitutions from the respective consensus sequences are shown (original base-nucleotide position-substituted base), as are the number of isolates found representing each genotype.