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Subtype distribution among sequenced specimens
| Subtype | Count | No. discrepanta (%) | Viral loadb |
|---|---|---|---|
| Ia | 8 | 3 (37.5) | 5.7 |
| Ic | 1 | 0 (0.0) | 4.1 |
| III | 6 | 6 (100.0) | 3.7 |
| IV | 3 | 3 (100.0) | 6.0 |
| V | 17 | 2 (11.8) | 4.9 |
| VI | 10 | 0 (0.0) | 5.4 |
| Total | 45 | 14 | 5.0 |
Discrepant specimens are those for which the difference between the expected and observed values exceeds 1.0 log10 for one or more primer/probes.
The viral load is the average of expected values in log10 templates/reaction.
