Suppression of FEN1 interferes with efficient repair of oxidative damage in mtDNA. (A) FEN1 was knocked down in HeLa cells by using siRNA. C, controls; Lipo, cells treated with Lipofectamine 2000; Neg., negative control siRNA; F. siRNA, FEN1-specific siRNA. (B and C) DNA damage and repair were assayed by long-range QPCR generating an 8.9-kb product from mtDNA and a 13.5-kb product from the β-globin gene for nuclear DNA. These were normalized to the total DNA in the sample for the nuclear product or a 221-bp PCR product for the mtDNA signal. (B) Damage was induced by various doses of H2O2 for 30 min. (C) Repair of mtDNA and nuclear DNA was monitored by QPCR after 30 min of 1.5 mM H2O2 treatment. NT, cells not treated with H2O2. Results shown are averages of three independent siRNA transfections; error bars represent standard deviations.