Table 2.
Sodium bisulfite genomic sequencing primer sets
Primer pair | Sequence | Amplicon location |
---|---|---|
En-4998S | 5′-GAATTTTTAGTATTTTAGAAGT-3′ | Enhancer |
En-45944AS | 5′-CCCTACCTTCCCTCTCAA-3′ | −4998 to −4544 |
En-4941S | 5′-TTT GTA ATT TGG AAG TTG AGT AA-3′ | |
En-4554AS | 5′-CCTCTCAAACCAAAATACTCTACAA-3′ | −4941 to −4554 |
Pr-1295S | 5′-GGTAGTAGGGTATATTAGTGTTTAGG-3′ | Promoter |
Pr-860AS | 5′-AATACACCAACACTCTCCAAACA-3′ | −1295 to −860 |
Pr-1211S | 5′-TGGTGTGATTTTAGAGTTTTGAGTAT-3′ | |
Pr-880AS | 5′-AACACTTCAAACCAAAATACATAC-3′ | −1211 to −880 |
Pr-965S | 5′-GATTAGATGTTTAGTTAGTGGTT-3′ | |
Pr-583AS | 5′-TTATCCTTAAATCTAACATTAA-3′ | −965 to −583 |
Pr-884S | 5′-AGTGTTTGGAGAGTGTTGGTGTATT-3′ | |
Pr-617AS | 5′-CCTCCCAACCCCAATTTCCTAA-3′ | −884 to −617 |
Pr-538S | 5′-AAGGATTTAAGGGTGGGGATT-3′ | |
Pr-74AS | 5′-AACTCTCCAATACTAACCCTC-3′ | −538 to −74 |
Pr-484S | 5′-GAGAGAATTTGTATGATTTTAGAGGTT-3′ | |
Pr-145AS | 5′-AACTCTAAAACCTCAACTCCAC-3′ | −484 to −145 |
Pr-346S | 5′-GTGTTATATTATAGAAGGATTTTTATG-3′ | |
Pr-286S | 5′-TGTTTTAGTTTTTATGTTGTAGTTTTAG-3′ | |
Pr+3AS | 5′-ACTACCTACTCCAACAAAACCCTAACC-3′ | −286 to +3 |
+4381S | 5′-TCACCCATCCCACCCCTGCACCCTT-3′ | |
+5066AS | 5′-GCGCCCGGGTCTCTCAGTCGCTGG-3′ | +4381 to +5066 |