Table 2.
Haplotype estimation frequency error
| No | example description | error | |||
| Arlequin | PHASE | Haplo-IHP | NullHap | ||
| 1 | biallelic loci: A(A1, A2), B(B1, B2), C(C1, C2) no null variants | 0% | 0% | 0% | 0% |
| 2 | biallelic loci: A(A0, A1), B(B0,B1), C(C0, C1), null variants: A0, B0 and C0 | 61% | 50% | 1% | 0% |
| 3 | multiallelic loci: A(A1, A2, A3), B(B1, B2, B3), no null variants | 0% | 1% | 78% | 0% |
| 4 | multiallelic loci: A(A0, A1, A2), B(B0,B1, B2), null variants: A0 and B0 | 62% | 62% | 100% | 0% |
| 5 | multiallelic and biallelic loci with null variants: A(A0,A1,A2), B(B0,B1), C(C0,C1) | 62% | 48% | 64% | 0% |
| 6 | details in Table 2, A(A0,A1,A2), B(B1,B2,B3,B4), C(C0,C1) | 79% | 79% | 82% | 0% |
Haplotype estimation frequency error for six polymorphisms with varying locus characteristics.