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. 2008 May 30;95(6):2711–2721. doi: 10.1529/biophysj.107.126243

TABLE 2.

Average κ2 values for energy transfer between AlexaFluor pairs during molecular dynamics simulations

AF pair Site 42 Site 55
1 2 0.119 1.812
3 2 1.785 0.205
3 4 2.650 0.650
5 4 0.606 0.126
1 4 0.322 0.134
5 2 0.416 0.277

Averages do not include the first 3-ns equilibration time.