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. Author manuscript; available in PMC: 2008 Aug 30.
Published in final edited form as: J Am Chem Soc. 2007 Apr 7;129(17):5419–5429. doi: 10.1021/ja066950n

Table 3.

Binding Site Residue Binding Energies (BSRBEs) in kcal/mol for the Hydrogen-Bonding Residues of the Avidin and Avidin with Asp 13 Removed Models

Protein Residues BSRBEvaca BSRBECPCMb
Avidin
Tyr 33 −18.1 −9.4
Ser 16 −11.3 −3.2
Asn 12 −4.9 −3.1
Asn 118–Asp 13 Pair −20.5 −9.0
Thr 35 −13.1 −6.0
Avidin with Asp 13 removed
Tyr 33 −15.3 −8.1
Ser 16 −9.8 −2.7
Asn 12 −8.3 −1.4
Asn 118 −5.0 −3.5
Thr 35 −13.5 −6.7
a

MP2/6-31+G(d,p)//B3LYP/6-31+G(d,p).

b

CPCM/HF/6-31+G(d,p) level corrections to MP2 energies using the dielectric of ether (ε = 4.33).