Table 3.

Individual genotyping results.

SNP name	Location	Gene (Allele)	NIMH			German			Combined
			Case freq	Control freq	p-value	Case freq	Control freq	p-value	p-value	OR (CI)
rs12410676a	1p13.3	VAV3 (G)	0.895	0.867	0.061	0.884	0.857	0.024	0.004	1.28 (1.09-1.51)
rs13414801	2p23.2	BRE (C)	0.696	0.628	0.001	0.658	0.660	0.913	0.056	ns
rs4148776a	2q31.3	ABCB11 (T)	0.062	0.042	0.049	0.055	0.048	0.418	0.062	ns
rs1131171	2q37.1	NCL (G)	0.842	0.809	0.048	0.828	0.805	0.104	0.013	1.20 (1.04-1.38)
rs7610043	3p24.1	RBMS3 (G)	0.567	0.492	0.0008	0.523	0.499	0.124	0.001	1.21 (1.08-1.35)
rs9863764a	3p26.1	GRM7 (G)	0.131	0.109	0.137	not genotyped
rs3762685a	3q24	PLSCR4 (C)	0.391	0.307	7.5×10−5	0.373	0.354	0.293	0.0009	1.22 (1.08-1.36)
rs4411993	4p16.1	SORCS2 (C)	0.907	0.864	0.003	0.888	0.862	0.030	0.0005	1.35 (1.14-1.61)
rs7683874b	4p16.1	SORCS2 (G)	0.950	0.928	0.041	0.954	0.931	0.006	0.0006	1.51 (1.19-1.92)
rs10937823b	4p16.1	SORCS2 (C)	0.949	0.912	0.001	0.954	0.930	0.004	1.4×10−5	1.67 (1.32-2.13)
rs2291182	4q13.3	C4orf35 (G)	0.103	0.070	0.011	0.089	0.080	0.436	0.027	1.25 (1.02-1.52)
rs7660807	4q13.3	UNQ689 (G)	0.111	0.070	0.001	0.096	0.084	0.266	0.004	1.33 (1.10-1.61)
rs2162126a	4q28.2	PHF17 (C)	0.884	0.840	0.004	0.156	0.148	0.5516	0.210	ns
rs3736456	4q35.1	CYP4V2 (C)	0.058	0.046	0.231	not genotyped
rs437179	6p21.32	SKIV2L (C)	0.747	0.700	0.018	0.745	0.714	0.053	0.003	1.21 (1.07-1.36)
rs13218303	6q24.3	GRM1 (A)	0.148	0.122	0.082	not genotyped
rs17350383a	7p21.1	HDAC9 (T)	0.181	0.161	0.218	not genotyped
rs7812884	8p23.2	CSMD1 (A)	0.078	0.062	0.174	not genotyped
rs2255317a	8q22.2	MATN2 (C)	0.898	0.874	0.095	not genotyped
rs942518	9q32	DFNB31 (G)	0.117	0.088	0.035	0.106	0.073	0.001	0.0001	1.44 (1.20-1.74)
rs17477151	11p12	NGL1 (G)	0.927	0.899	0.027	0.926	0.916	0.285	0.030	1.26 (1.03-1.55)
rs11021955	11p15.3	GALNTL4 (C)	0.898	0.855	0.003	0.883	0.860	0.059	0.001	1.33 (1.12-1.56)
rs7933829	11q24.3	C11orf44 (C)	0.819	0.762	0.002	0.779	0.769	0.538	0.023	1.18 (1.03-1.33)
rs9315885a	13q14.11	DGKH (T)	0.737	0.680	0.005	0.701	0.654	0.006	0.0001	1.26 (1.12-1.42)
rs1012053a	13q14.11	DGKH (A)	0.899	0.843	0.0002	0.882	0.826	1.5 × 10−5	1.5 × 10−8	1.59 (1.35-1.87)
rs1170191	13q14.11	DGKH (G)	0.868	0.820	0.003	0.849	0.800	0.0003	3.7 × 10−6	1.42 (1.23-1.65)
rs9513877	13q33.1	VGCNL1 (G)	0.676	0.601	0.0005	0.643	0.602	0.021	8.1 × 10−5	1.26 (1.12-1.41)
rs17125698a	14q32.11	CHES1 (C)	0.858	0.821	0.028	0.868	0.843	0.049	0.003	1.26 (1.08-1.47)
rs1818290a	16p13.2	A2BP1 (G)	0.014	0.010	0.657	not genotyped
rs7204975a	16p13.2	A2BP1 (C)	0.886	0.836	0.001	0.857	0.851	0.542	0.533	ns
rs10500336	16p13.3	A2BP1 (G)	0.146	0.110	0.018	0.142	0.130	0.380	0.022	1.20 (1.02-1.41)
rs4398100	16q23.2	PLCG2 (C)	0.834	0.802	0.069	0.851	0.829	0.106	0.014	1.20 (1.04-1.39)
rs2360111	17p13.1	NXN (C)	0.629	0.554	0.0007	0.592	0.556	0.048	0.0003	1.23 (1.10-1.37)
rs7212506	17q24.3	ABCA6 (C)	0.061	0.049	0.236	not genotyped
rs6501822a	1725.1	LLGL2 (G)	0.918	0.901	0.0192	not genotyped
rs12608087	18q11.2	LAMA3 (C)	0.935	0.905	0.011	0.920	0.912	0.439	0.030	1.25 (1.02-1.52)
rs335929	18q11.2	AQP4 (C)	0.225	0.179	0.010	0.204	0.097	0.097	0.004	1.23 (1.07-1.41)
rs4813030c	20p13	PSMF1 (C)	0.829	0.777	0.004	0.807	0.798	0.545	0.023	1.18 (1.03-1.35)

^aDid not meet all allele frequency, p-value, or OR thresholds in both pooled samples

^bSNPs are in strong linkage disequilibrium: D' = 0.99, r² = 0.96

^cSNP is not in HWE