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. 2008 Sep;18(9):1538–1543. doi: 10.1101/gr.076067.108

Figure 3.

Figure 3.

Two examples of SNP genotype discrepancies between the HapMap project and the new assembly data from the 1000 Genomes Project. In the figure, the HapMap SNP ID and genotypes are shown in the white and bold font. In the left panel, the assembly shows a rare allele C in the position not reported in the HapMap. In the right panel, the assembly shows a deletion SNP but HapMap reports that it is A/T SNP. The deletion SNP likely to be true as Illumina sequencing technology has a very low rate of insertion/deletion sequencing errors.