Table I.
Differentially expressed DNA repair genes
Bold type designates similar regulation during CaLCuV infection and genotoxic stress. No results are shown for genes not on the array. *, Plastid protein. nc, No change.
| Gene Identifier | Gene Name | CaLCuV | Genotoxic Stressa |
|---|---|---|---|
| Damage tolerance | |||
| At3g04880 | DRT102 | up | nc |
| At1g23260 | MMS1 | up | |
| At1g70660 | MMS2 | up | |
| At2g39100 | RAD18 | nc | up/down |
| At5g44740 | RAD30 | nc | down |
| At4g35740 | RECQ3 | nc | up |
| At1g10930 | RECQ4A | nc | down |
| At1g67500 | REV3 | nc | up |
| At1g52410 | TSA1 | down | |
| At5g13930 | CHS (TT4) | down | down |
| At3g55120 | CFI (TT5) | down | up/down |
| At3g51240 | F3H (TT6) | down | |
| At3g12610 | *DRT100 | down | |
| At1g30480 | *DRT111 | nc | up |
| At1g20340 | *DRT112 | down | nc |
| BER | |||
| At4t02390 | PARP1 | up | up/down |
| At2g31320 | PARP2 | up | up |
| At1g80420 | XRCC1 | up | |
| At2g41460 | ARP | nc | up |
| At3g10010 | DML2 (DNA glycosylase) | up | |
| At1g75090 | DNA glycosylase | down | |
| At3g12710 | DNA glycosylase | down | |
| At4g12740 | DNA glycosylase | down | |
| At5g44680 | DNA glycosylase | down | |
| At3g50880 | *Base excision | up | |
| At1g21710 | *OGG1 | up | nc |
| NER | |||
| At3g50360 | CEN2 | up | |
| At4g37010 | CEN2-like | up | up |
| At1g03750 | CSB-like | nc | up |
| At2g18760 | ERCC6/CSB | up | up |
| At1g79650 | RAD23 | up | |
| At3g02540 | RAD23-3 | down | |
| At5g38470 | RAD23-4 | up | |
| At1g55750 | TFB1-1 | nc | up |
| At1g55680 | TFB1-2 | up | nc |
| At1g12400 | TFB5 | up | |
| DSB repair | |||
| At4g21070 | BRCA1 | nc | up |
| At3g22880 | DMC1 | up | nc |
| At1g64750 | DSS1(1) | up | nc |
| At5g45010 | DSS1(V) | up | |
| At3g57300 | INO80 | up | |
| At1g48050 | KU80 | up | |
| At5g61460 | MIM | nc | up/down |
| At5g66130 | RAD17 | up | |
| At2g31970 | RAD50 | up | nc |
| At2g28460 | RAD51B | nc | up |
| At2g45280 | RAD51C | nc | up |
| At1g10930 | REC4QA | down | nc |
| At3g26680 | SMN1 | nc | up |