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. 2008 Jul 24;36(15):4833–4844. doi: 10.1093/nar/gkn470

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© 2008 The Author(s)

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — Some trans-SAs were related to cis-SAs through paralogues. (A) NDE1 and MYH11 formed a cis-SA pair sharing the last exon of NDE1 (99 bp overlap with perfect complementarity), from UCSC genome browser. The arrow indicates MYH9's paralogous exon to the cis-pairing region of MYH11. NDE1 shares this paralogous exon and thus trans-pairs with MYH9. (B) RFPL1 and RFPL1S formed a cis-SA (293 bp overlap with perfect complementarity). RFPL3 and RFPL3S formed another cis-SA (588 bp overlap with perfect complementarity). RFPL3S and RFPL1 formed a trans-SA (591 bp overlap with an e-value of 0.0 and an identity of 95%). RFPL3 and RFPL1S formed another trans-SA (519 bp overlap with an e-value of 0.0 and an identity of 96%). Red arrows indicate the cis-pairing region of RFPL1 and RFPL1S was duplicated to the locus of RFPL3 and RFPL3S.