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. 2008 Aug 1;59(12):3465–3474. doi: 10.1093/jxb/ern196

Table 2.

Expression profiles of Cu-responsive genes under excess Cu treatment conditions (10, 45, and 130 μM of CuCl2)

Probe ID Full length cDNA Locus_ID Description F (experiment/control)
Cu-exposure (μM)
10 45 130
Defence (up-regulated)
A_71_P105870 AK060724 LOC_Os02g41630 Phenylalanine ammonia-lyase 1.02 1.70 2.01
A_71_P105867 AK068993 LOC_Os02g41680 Phenylalanine ammonia-lyase 1.01 1.42 5.01
A_71_P105871 AK102817 LOC_Os02g41630 Phenylalanine ammonia-lyase 1.19 1.82 2.26
A_71_P113211 AK067801 LOC_Os04g43800 Phenylalanine ammonia-lyase 1.34 1.78 4.61
A_71_P126860 AK099443 LOC_Os11g02440 Chalcone-flavonone isomerase 1.38 1.89 2.19
A_71_P104485 AK070746 LOC_Os02g08420 Dihydroflavonol-4-reductase 1.07 1.32 2.23
A_71_P119630 AK065515 LOC_Os08g38910 Caffeoyl-CoA O-methyltransferase 2 1.19 2.12 3.18
A_71_P115157 AK104994 LOC_Os05g25640 Trans-cinnamate 4-mono-oxygenase 1.21 1.42 2.43
A_71_P123533 AK069308 LOC_Os10g02880 O-methyltransferase ZRP4 1.17 1.19 4.27
A_71_P122641 AK072740 LOC_Os09g17560 O-methyltransferase ZRP4 1.03 1.59 21.92
A_71_P111602 AK065090 LOC_Os04g59190 Peroxidase 2 precursor 1.38 1.79 7.16
A_71_P113417 AK106200 LOC_Os05g04500 Peroxidase 63 precursor 1.62 2.97 8.13
A_71_P117837 AK072862 LOC_Os07g47990 Peroxidase 2 precursor 1.34 1.37 3.50
A_71_P103756 AK099241 LOC_Os01g22370 Peroxidase 1 precursor 1.22 1.48 4.33
A_71_P120304 AK069503 LOC_Os08g02110 Peroxidase 47 precursor 1.20 1.31 3.30
A_71_P117839 AK073202 LOC_Os07g48020 Peroxidase 2 precursor 1.18 1.69 9.18
A_71_P103305 AK107822 LOC_Os01g72170 Glutathione S-transferase 1.21 1.24 2.07
A_71_P125246 AK062653 LOC_Os11g47809 Metallothionein-like protein 1 1.37 1.48 4.06
Defence (down-regulated)
A_71_P103051 AK103129 LOC_Os01g53330 Anthocyanidin 5,3-O-glucosyltransferase 0.80 0.58 0.29
A_71_P119739 AK067868 LOC_Os08g07880 Phosphopantothenate-cysteine ligase 0.61 0.48 0.43
A_71_P103162 AK062796 LOC_Os01g74300 Metallothionein-like protein type 2 0.92 0.82 0.16
Response to stress (up-regulated)
A_71_P112980 AK100788 LOC_Os04g34600 ABA/WDS induced protein 1.47 1.88 2.17
A_71_P115472 AK107775 LOC_Os06g07030 Dehydration responsive element binding protein 1.17 1.64 4.35
A_71_P126985 AK062422 LOC_Os09g35010 Dehydration-responsive element-binding protein 1B 1.24 1.86 2.27
A_71_P118699 AK106022 LOC_Os07g44250 Disease resistance response protein 206 1.08 1.40 3.35
A_71_P111503 AK071013 LOC_Os04g41680 Endochitinase A precursor 1.09 1.14 2.45
A_71_P114512 AK060312 LOC_Os05g42230 ER6 protein 1.03 1.16 2.37
A_71_P124122 AK065000 LOC_Os10g22520 Glucan 1,3-β-glucosidase precursor 1.14 1.40 4.57
A_71_P121735 AK061896 LOC_Os09g30418 Heat shock protein 81-3 1.37 1.78 2.39
A_71_P126129 AK066682 LOC_Os12g14440 Jasmonate-induced protein 1.63 1.99 11.92
A_71_P103425 AK062520 LOC_Os01g24710 Salt stress-induced protein 1.16 1.28 6.20
A_71_P114369 AK070138 LOC_Os05g28740 Universal stress protein 1.54 1.55 2.54
A_71_P114262 AK065866 LOC_Os05g15770 Xylanase inhibitor protein 2 precursor 2.01 2.09 4.34
A_71_P114261 AK062114 LOC_Os05g15770 Xylanase inhibitor protein 2 precursor 1.66 2.01 4.20
Response to stress (down-regulated)
A_71_P117292 AK099477 LOC_Os06g47800 Disease resistance protein RGA3 0.77 0.61 0.27
A_71_P118794 AK065027 LOC_Os07g01630 Disease resistance response protein 206 0.95 0.77 0.49
A_71_P122593 AK060664 LOC_Os09g37600 Erwinia-induced protein 1 0.94 0.76 0.43
Photosynthesis (up-regulated)
A_71_P114297 AK100910 LOC_Os05g50380 Glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor 1.39 1.47 3.93
A_71_P116411 AK101836 LOC_Os06g49110 Δ-Aminolevulinic acid dehydratase, chloroplast precursor 1.39 1.73 2.03
Photosynthesis (down-regulated)
A_71_P105099 AK062994 LOC_Os02g51470 ATP synthase delta chain, chloroplast precursor 0.96 0.87 0.45
A_71_P115841 AK060904 LOC_Os06g21590 Chlorophyll a-b binding protein 6A, chloroplast precursor 0.81 0.71 0.48
A_71_P125058 AK061295 LOC_Os11g13890 Chlorophyll a-b binding protein M9, chloroplast precursor 0.70 0.63 0.37
A_71_P118301 AK109399 LOC_Os07g37550 Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor 0.69 0.58 0.40
A_71_P121584 AK109203 LOC_Os09g32620 Chloroplastic quinone-oxidoreductase 0.76 0.73 0.48
A_71_P101901 AK066307 LOC_Os12g10604 Cytochrome b/b6/petB family protein 0.61 0.54 0.32
A_71_P126393 AK059037 LOC_Os12g08770 Photosystem I reaction centre subunit N, chloroplast precursor 0.73 0.67 0.40
A_71_P114565 AK066345 LOC_Os05g43310 Photosystem II reaction centre W protein, chloroplast precursor 0.76 0.76 0.40
A_71_P108389 AK058858 LOC_Os03g55720 Plastoquinol-plastocyanin reductase 0.94 0.73 0.36
A_71_P117917 AK069170 LOC_Os07g36080 Oxygen-evolving enhancer protein 3-1, chloroplast precursor 0.93 0.80 0.30
A_71_P117916 AK058793 LOC_Os07g36080 Oxygen-evolving enhancer protein 3-1, chloroplast precursor 0.70 0.61 0.29
A_71_P120166 AK058551 LOC_Os08g25734 Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor 0.86 0.84 0.47
A_71_P124217 AK110705 LOC_Os06g39730 Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein 0.76 0.73 0.50
Transport (up-regulated)
A_71_P105105 AK108711 LOC_Os02g34580 Ammonium transporter 2 1.06 1.35 2.47
A_71_P119764 AK065217 LOC_Os08g03350 LHT1 1.19 1.36 2.46
A_71_P117869 AK105311 LOC_Os07g33780 PDR-like ABC transporter 1.09 1.17 2.61
A_71_P127448 AK108393 LOC_Os05g27010 Peptide transporter PTR2 1.17 1.33 2.22
A_71_P103242 AK063835 LOC_Os01g45640 Tat pathway signal sequence family protein 1.02 1.04 7.43
A_71_P100920 AK103784 LOC_Os01g31980 Transparent testa 12 protein 1.10 1.43 2.56
Transport (down-regulated)
A_71_P106018 AK100650 LOC_Os02g44980 Amino acid transport protein 0.99 0.76 0.45
A_71_P116013 AK107472 LOC_Os06g12320 Amino acid/polyamine transporter II 0.80 0.68 0.22
A_71_P115705 AK072617 LOC_Os06g03700 Oligopeptide transporter 9 0.87 0.84 0.24
A_71_P104541 AK065840 LOC_Os02g46460 Peptide transporter PTR2 0.74 0.57 0.29
A_71_P122896 AK066937 LOC_Os10g42900 Peptide transporter PTR2 0.77 0.73 0.49
A_71_P114702 AK070558 LOC_Os05g34010 Peptide transporter PTR2 0.90 0.77 0.48
A_71_P102553 AK066793 LOC_Os01g50616 Phosphatidylinositol transporter/ transporter 0.75 0.68 0.44
A_71_P119359 AK066067 LOC_Os07g46780 Tyrosine-specific transport protein 0.67 0.64 0.41
A_71_P123937 AK111957 LOC_Os10g38910 ABC-type Co2+ transport system, permease component 0.91 0.73 0.44
A_71_P115940 AK105826 LOC_Os06g30730 ATPase, coupled to transmembrane movement of substances 0.99 0.75 0.48
A_71_P100064 AK065048 LOC_Os01g17214 Carbohydrate transporter/sugar transporter/transporter 0.86 0.63 0.22
A_71_P123327 AK071193 LOC_Os10g35140 Permeases of the drug/metabolite transporter 0.82 0.68 0.50
A_71_P104342 AK071338 LOC_Os02g56510 Phosphate transporter 1 0.59 0.54 0.42
A_71_P117558 AK067110 LOC_Os06g29790 Phosphate transporter 1 0.55 0.48 0.27
A_71_P112325 AK070018 LOC_Os04g38026 Sugar transport protein 5 0.74 0.63 0.37
A_71_P108667 AK067353 LOC_Os03g09930 Sulphate transporter 2.1 0.53 0.39 0.10
A_71_P112060 AK072809 LOC_Os04g55800 Sulphate transporter 3.3 0.90 0.84 0.49
A_71_P116372 AK063490 LOC_Os06g36450 Transporter like protein 0.92 0.66 0.39

Values are means of fold-change (F) calculated from triplicate data of different leaves. The descriptions of each gene were annotated according to the TIGR database (http://www.tigr.org/tdb/e2k1/osa1/), and were classified into rough functional categories based on the Gene Ontology Classification database (http://www.geneontology.org/).