Table 2.
microarray ID | status | validation | MLDA rank* | PAM rank | SAM rank | CGI*** | gene symbol** | GenBank Accession | Chromosome |
66_G_6 | hypermethylated | Yes | 1 | 1 | 1 | Yes | |||
121_D_9 | hypermethylated | Yes | 2 | 5 | 6 | Yes | CRABP1 | NM_004378 | 15 |
39_E_1 | hypermethylated | ND | 3 | 2 | 2 | No | |||
122_D_9 | hypermethylated | No | 4 | 11 | 11 | Yes | SOX12 | NM_006943 | 20 |
123_D_9 | hypermethylated | No | 5 | 10 | 10 | Yes | SOX12 | NM_006943 | 20 |
51_H_8 | hypermethylated | Yes | 6 | 18 | 19 | No | FEZF2 | NM_018008 | 3 |
58_A_1 | hypermethylated | ND | 7 | 22 | 22 | Yes | |||
80_H_5 | hypermethylated | ND | 8 | 14 | 16 | No | |||
21_A_11 | hypermethylated | Yes | 9 | 17 | 18 | Yes | NTN4 | NM_021229 | 12 |
38_D_7 | hypermethylated | Yes | 11 | 23 | 24 | Yes | AGBL2 | NM_024783 | 11 |
40_E_1 | hypermethylated | ND | 12 | 19 | 17 | No | |||
18_A_7 | hypermethylated | ND | 13 | 20 | 20 | No | EDIL3 | NM_005711 | 5 |
55_F_8 | hypermethylated | Yes | 14 | 9 | 9 | Yes | BC127881 | BC127881 | 7 |
122_B_1 | hypermethylated | ND | 15 | 16 | 14 | No | |||
109_A_6 | hypermethylated | No | 18 | 12 | 13 | Yes | |||
41_D_9 | hypermethylated | Yes | 22 | 8 | 8 | Yes | WNT1 | NM_005430 | 12 |
42_D_9 | hypermethylated | ND | 23 | 4 | 4 | No | |||
119_A_6 | hypermethylated | Yes | 24 | 6 | 5 | Yes | NR2E1 | NM_003269 | 6 |
63_A_8 | hypermethylated | ND | 26 | 15 | 15 | No | |||
6_D_4 | hypermethylated | Yes | 31 | 3 | 3 | Yes | LMX1A | NM_177398 | 1 |
17_H_9 | hypermethylated | Yes | 34 | 13 | 12 | Yes | HRASLS3 | NM_006290 | 6 |
5_D_4 | hypermethylated | Yes | 35 | 7 | 7 | Yes | LMX1A | NM_177398 | 1 |
24_D_3 | hypermethylated | Yes | 75 | 24 | 23 | Yes | SP5 | NM_001003845 | 2 |
122_G_1 | hypermethylated | ND | 101 | 21 | 21 | Yes |
ND: not done. Yes: validated. No: not validated
MLDA rank*: the rank of standardised residuals to the robust regression line constructed by the averaged sensitive scores against averaged resistant scores
Gene symbol**: only the gene of which transcription start site (TSS) is within 5 kb span of the loci
CGI***: CpG island defined by Gardiner-Garden and Frommer [31].