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. 2008 Aug 8;24(18):2096–2097. doi: 10.1093/bioinformatics/btn397

Fig. 1.

Fig. 1.

Loading a GenBank file with BioJava and writing it out as FASTA. The example demonstrates the use of several convenience methods that hide the bulk of the implementation. If the developer desires a more flexible parser it is possible to make use of the interfaces hidden behind the convenience methods to expose a fully customizable, multi-component, event-based parsing model.